Detailed information of component protein
Summary
| Component ID | T6CP259646 |
| Component protein type | TssE |
| T6SS ID (Type) | T6SS01262  (Type i1) |
| Strain | Vibrio parahaemolyticus strain 12-297/B |
| Replicon | chromosome |
| Sequence | Protein sequence (137 a.a.); Nucleotide sequence (411 bp) |
| Reference |
Experimental investigation has been performed on this T6SSExternal database links
| Locus tag (Gene) | B5C30_RS15340 |
| Coordinate (Strand) | 26406..26816 (+) |
| NCBI ID | WP_005480585.1 |
| RefSeq | NZ_MYFG01000475 |
| Uniprot ID | A0A072J844_VIBPH |
| KEGG ID | - |
| PDB ID | - |
Pfam domain hit(s)
| Domain | Pfam ID | E-value | Aligned region |
|---|---|---|---|
| GPW_gp25 | PF04965.16 | 1.5e-17 | 29..115 |
Transmembrane helices
- Transmembrane helices are predicted using TMHMM 2.0 software.
| Prediction | Region | Sequence |
|---|---|---|
| Outside | 1-136 | MEKGYRLLERIELGEPKNCYEKVVSHKHLIESIHLHLADLLNTHSGNAMIDSEYGLPDFNDVLSNNTNLVRHIQKNITATIERFEPRLLNVEVHYREDHHNPLQLGFGIRGEVSHNGGKVPMSIDVYMGTDGQFNV |
Signal peptides
- Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
- Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
- Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
| Prediction | Probability | Cleavage site | Signal peptide sequence |
|---|---|---|---|
| Other | 0.9954 | - | - |
Protein sequence: 137 a.a.
>T6CP259646 NZ_MYFG01000475:26406-26816 [Vibrio parahaemolyticus] [TssE]
MEKGYRLLERIELGEPKNCYEKVVSHKHLIESIHLHLADLLNTHSGNAMIDSEYGLPDFNDVLSNNTNLVRHIQKNITAT
IERFEPRLLNVEVHYREDHHNPLQLGFGIRGEVSHNGGKVPMSIDVYMGTDGQFNV*
MEKGYRLLERIELGEPKNCYEKVVSHKHLIESIHLHLADLLNTHSGNAMIDSEYGLPDFNDVLSNNTNLVRHIQKNITAT
IERFEPRLLNVEVHYREDHHNPLQLGFGIRGEVSHNGGKVPMSIDVYMGTDGQFNV*
Nucleotide sequence: 411 bp
>T6CP259646 NZ_MYFG01000475:26406-26816 [Vibrio parahaemolyticus] [TssE]
ATGGAAAAAGGTTATCGTCTTTTAGAGCGGATTGAGTTGGGTGAGCCCAAAAACTGCTACGAAAAAGTGGTCTCCCACAA
GCATTTGATTGAATCTATTCATTTGCATCTTGCAGATTTGCTGAATACGCATTCTGGTAATGCGATGATCGATAGTGAAT
ACGGTTTGCCCGATTTTAATGACGTTCTGTCTAATAATACGAATCTCGTTCGCCACATCCAAAAGAACATCACAGCGACC
ATAGAACGCTTTGAACCTCGGCTACTTAACGTCGAAGTTCACTATCGTGAAGACCACCACAATCCATTACAGCTCGGTTT
TGGTATTCGCGGAGAAGTTTCCCATAACGGCGGTAAAGTTCCAATGTCGATCGATGTCTACATGGGAACCGACGGCCAAT
TCAACGTTTAG
ATGGAAAAAGGTTATCGTCTTTTAGAGCGGATTGAGTTGGGTGAGCCCAAAAACTGCTACGAAAAAGTGGTCTCCCACAA
GCATTTGATTGAATCTATTCATTTGCATCTTGCAGATTTGCTGAATACGCATTCTGGTAATGCGATGATCGATAGTGAAT
ACGGTTTGCCCGATTTTAATGACGTTCTGTCTAATAATACGAATCTCGTTCGCCACATCCAAAAGAACATCACAGCGACC
ATAGAACGCTTTGAACCTCGGCTACTTAACGTCGAAGTTCACTATCGTGAAGACCACCACAATCCATTACAGCTCGGTTT
TGGTATTCGCGGAGAAGTTTCCCATAACGGCGGTAAAGTTCCAATGTCGATCGATGTCTACATGGGAACCGACGGCCAAT
TCAACGTTTAG