Detailed information of component protein


Summary

Component ID T6CP259641
Component protein type TssD
T6SS ID (Type) T6SS17510 experimental (Type Unknown)
Strain Burkholderia glumae BGR1
Replicon chromosome II
Sequence Protein sequence (186 a.a.); Nucleotide sequence (558 bp)
Reference
experimental Experimental investigation has been performed on this T6SS

External database links

Locus tag (Gene) BGLU_RS21545
Coordinate (Strand) 897718..898275 (-)
NCBI ID WP_012733560.1
RefSeq NC_012721
Uniprot ID A0A2J9HIZ3_BURGL, C5AMW5_BURGB
KEGG ID bgl:bglu_2g07470
PDB ID -

Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
T6SS_HCP PF05638.14 1.1e-17 36..152

Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Outside 1-185 MDLILFQPGDQSIMNSDGSEIDNSGWTADGPSGLCIEIVSLHQGMKQQVTTDVSNNARTSGRPIITEFTLVKYVDQTSVKLYEYCLGAKLLGSGAGAPSTIYIARESGGKTMNIIKIQLKDALISEIQLQTHPNDMPTEQFKLNFTEVIWTYTQQLNNMTAKGVKTAGWSLAKNMPIGGSFSGLV



Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.9865 - -



  Protein sequence: 186 a.a.    

>T6CP259641 NC_012721:c898275-897718 [Burkholderia glumae BGR1] [TssD]
MDLILFQPGDQSIMNSDGSEIDNSGWTADGPSGLCIEIVSLHQGMKQQVTTDVSNNARTSGRPIITEFTLVKYVDQTSVK
LYEYCLGAKLLGSGAGAPSTIYIARESGGKTMNIIKIQLKDALISEIQLQTHPNDMPTEQFKLNFTEVIWTYTQQLNNMT
AKGVKTAGWSLAKNMPIGGSFSGLV*

  Nucleotide sequence: 558 bp    

>T6CP259641 NC_012721:c898275-897718 [Burkholderia glumae BGR1] [TssD]
ATGGATCTGATTCTCTTCCAGCCGGGCGATCAAAGCATCATGAACAGCGACGGCAGCGAGATCGACAACTCGGGCTGGAC
GGCCGACGGCCCGTCGGGCCTGTGCATCGAAATCGTGTCGCTGCACCAGGGCATGAAGCAGCAGGTCACCACCGACGTCA
GCAACAACGCGCGGACCTCGGGCCGGCCCATCATCACCGAGTTCACGCTGGTCAAGTACGTGGACCAGACCTCGGTGAAG
CTCTACGAGTACTGCCTCGGCGCCAAGCTGCTGGGCAGCGGCGCGGGCGCGCCGAGCACCATCTACATCGCCCGCGAGTC
GGGCGGCAAGACGATGAACATCATCAAGATCCAGCTGAAGGACGCCCTGATCAGCGAGATCCAGCTGCAGACGCACCCGA
ACGACATGCCCACCGAGCAGTTCAAGCTCAACTTCACCGAAGTCATCTGGACCTACACGCAGCAGCTCAACAACATGACT
GCCAAGGGGGTCAAGACGGCCGGCTGGAGTCTCGCCAAGAACATGCCGATCGGCGGCAGCTTCTCGGGGCTCGTCTGA