Detailed information of component protein


Summary

Component ID T6CP259640
Component protein type TssE
T6SS ID (Type) T6SS17510 experimental (Type Unknown)
Strain Burkholderia glumae BGR1
Replicon chromosome II
Sequence Protein sequence (126 a.a.); Nucleotide sequence (378 bp)
Reference
experimental Experimental investigation has been performed on this T6SS

External database links

Locus tag (Gene) BGLU_RS21540
Coordinate (Strand) 897277..897654 (-)
NCBI ID WP_012733559.1
RefSeq NC_012721
Uniprot ID A0A2J9HJ07_BURGL, C5AMW4_BURGB
KEGG ID bgl:bglu_2g07460
PDB ID -

Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
GPW_gp25 PF04965.16 2.3e-09 22..109

Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Outside 1-125 MQFLFERLAEPPSFDGTQTFDLRAAVAAQIQRLVSARITRSGGERDLLDFGLPSVVEFELNSKPQLELYAQRLARLIARYEPRLKSAKVRIEAHDEALCPYRIAIYGTLDPSNGVDVFHFELPSH



Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.9911 - -



  Protein sequence: 126 a.a.    

>T6CP259640 NC_012721:c897654-897277 [Burkholderia glumae BGR1] [TssE]
MQFLFERLAEPPSFDGTQTFDLRAAVAAQIQRLVSARITRSGGERDLLDFGLPSVVEFELNSKPQLELYAQRLARLIARY
EPRLKSAKVRIEAHDEALCPYRIAIYGTLDPSNGVDVFHFELPSH*

  Nucleotide sequence: 378 bp    

>T6CP259640 NC_012721:c897654-897277 [Burkholderia glumae BGR1] [TssE]
ATGCAGTTCCTGTTTGAGCGCCTGGCGGAACCTCCCTCGTTCGACGGCACGCAGACGTTCGATCTGCGCGCCGCCGTCGC
CGCGCAGATCCAGCGGCTGGTCAGCGCGCGCATCACGCGCTCGGGCGGCGAACGCGATCTGCTCGACTTCGGTTTGCCGA
GCGTGGTGGAGTTCGAGCTGAACAGCAAGCCGCAGCTCGAGCTGTATGCGCAGCGGCTCGCCCGCCTCATCGCCCGCTAC
GAACCGCGCCTGAAGTCCGCCAAGGTGCGCATCGAGGCGCACGACGAGGCGCTTTGCCCGTATCGCATCGCGATCTACGG
CACGCTCGACCCCAGCAACGGCGTGGACGTGTTCCACTTCGAGCTGCCTTCCCACTGA