Detailed information of component protein


Summary

Component ID T6CP259639
Component protein type TssF
T6SS ID (Type) T6SS17510 experimental (Type Unknown)
Strain Burkholderia glumae BGR1
Replicon chromosome II
Sequence Protein sequence (617 a.a.); Nucleotide sequence (1851 bp)
Reference
experimental Experimental investigation has been performed on this T6SS

External database links

Locus tag (Gene) BGLU_RS21535
Coordinate (Strand) 895419..897269 (-)
NCBI ID WP_012733558.1
RefSeq NC_012721
Uniprot ID A0A2J9HIZ8_BURGL, C5AMW3_BURGB
KEGG ID bgl:bglu_2g07450
PDB ID -

Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
T6SS_TssF PF05947.14 1.9e-168 7..612

Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Outside 1-616 MQAATVTLSDCFREELASLRTESVQFSEKHRELARTLGLNAREASDPQVELLLQSFAFLAARLRHQVELDKARLPNTLLSFLYPHLEAPIPSMLIARIDVKPDGTDYAKEQLLQRGRTVNALTANQLGQNVECRFQTCYDTPLLPLRIDAVVLESASEYAFAGAGSSSRSVLRVRLSAAGVGTLQSKGRGPRRLRFYIDDAQPDAVALYEMIALHLESIHVLPAAPLTPGAQPLRQLPAEALRWLGMEPDEAVLSANPHTHPGYRLLQEYFAFPEKFGFFEIGRLDELDFSGVSEYFDLLLMLDMPFDPKHHFSAHSLVLNCVPLVNLFTQRIEPIALDHSEYEYRVTGDFTNHRYCEIHSIRELESISSEGKPRPIAPYFAMDNFASLEGQDYFYLCRRLPATAANVAGSEMFVSFLDQQFNLGQLTDEVVGGTALCTNRRLPERLMSGSALHLEGGGPVNRIVAMTKPTQHHTPPQIGSRPWSLVSQLALNHLSLDGGALALAALKDILRLHVGPHRESGWKQIDAITELRSRSIMRHVGRDGWRGFVRGSELTVVMEPIDIGAGSVVRFCSVLREFLRGYASVNHLVEVALETRNLKGSPKQWQASAGTAIAL



Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.9949 - -



  Protein sequence: 617 a.a.    

>T6CP259639 NC_012721:c897269-895419 [Burkholderia glumae BGR1] [TssF]
MQAATVTLSDCFREELASLRTESVQFSEKHRELARTLGLNAREASDPQVELLLQSFAFLAARLRHQVELDKARLPNTLLS
FLYPHLEAPIPSMLIARIDVKPDGTDYAKEQLLQRGRTVNALTANQLGQNVECRFQTCYDTPLLPLRIDAVVLESASEYA
FAGAGSSSRSVLRVRLSAAGVGTLQSKGRGPRRLRFYIDDAQPDAVALYEMIALHLESIHVLPAAPLTPGAQPLRQLPAE
ALRWLGMEPDEAVLSANPHTHPGYRLLQEYFAFPEKFGFFEIGRLDELDFSGVSEYFDLLLMLDMPFDPKHHFSAHSLVL
NCVPLVNLFTQRIEPIALDHSEYEYRVTGDFTNHRYCEIHSIRELESISSEGKPRPIAPYFAMDNFASLEGQDYFYLCRR
LPATAANVAGSEMFVSFLDQQFNLGQLTDEVVGGTALCTNRRLPERLMSGSALHLEGGGPVNRIVAMTKPTQHHTPPQIG
SRPWSLVSQLALNHLSLDGGALALAALKDILRLHVGPHRESGWKQIDAITELRSRSIMRHVGRDGWRGFVRGSELTVVME
PIDIGAGSVVRFCSVLREFLRGYASVNHLVEVALETRNLKGSPKQWQASAGTAIAL*

  Nucleotide sequence: 1851 bp    

>T6CP259639 NC_012721:c897269-895419 [Burkholderia glumae BGR1] [TssF]
ATGCAAGCCGCCACCGTCACGCTCAGCGACTGCTTCCGCGAGGAACTCGCCTCGCTGCGCACCGAGTCGGTCCAGTTCAG
CGAGAAGCATCGCGAGCTGGCCCGCACGCTCGGCCTCAACGCGCGCGAGGCGAGCGACCCGCAGGTCGAGCTGCTGCTGC
AGTCGTTCGCCTTTCTCGCGGCACGCCTGCGGCACCAGGTGGAACTGGACAAGGCGCGCCTGCCCAATACCCTGCTGTCG
TTCCTCTATCCGCACCTGGAGGCGCCGATCCCGTCGATGCTGATCGCGCGCATCGACGTGAAGCCCGACGGCACCGACTA
TGCCAAGGAACAACTGCTGCAGCGCGGCCGCACCGTGAATGCGCTGACCGCCAACCAGCTCGGCCAGAACGTCGAGTGCC
GGTTCCAGACCTGCTACGACACCCCGCTGCTGCCGCTGCGCATCGACGCCGTGGTGCTCGAATCGGCGAGCGAATACGCG
TTCGCGGGCGCCGGCTCGTCGTCGCGCTCGGTGCTGCGGGTCCGTCTCTCGGCGGCCGGCGTCGGCACCCTGCAGTCGAA
GGGGCGCGGGCCGCGCCGGCTGCGCTTCTACATCGACGACGCGCAGCCCGACGCGGTGGCGCTCTACGAGATGATCGCGC
TGCACCTGGAGAGCATCCACGTGCTGCCGGCCGCGCCGCTCACGCCCGGCGCGCAGCCCCTGCGGCAGCTGCCGGCCGAG
GCGCTGCGCTGGCTCGGCATGGAACCCGACGAGGCGGTGCTCAGCGCCAACCCGCACACGCACCCCGGCTATCGCCTGCT
GCAGGAGTATTTCGCGTTTCCGGAGAAGTTCGGCTTCTTCGAGATCGGCCGGCTCGACGAGCTCGACTTCAGCGGCGTGA
GCGAGTATTTCGACCTGCTGCTGATGCTCGACATGCCGTTCGACCCCAAGCATCATTTCTCGGCCCACTCGCTGGTGCTG
AACTGCGTGCCGCTCGTCAACCTCTTCACGCAGCGCATCGAGCCGATCGCGCTCGATCACAGCGAGTACGAATACCGCGT
GACGGGCGACTTCACGAATCACCGCTACTGCGAGATCCATTCGATCCGCGAGCTCGAATCGATCTCGAGCGAGGGCAAGC
CGCGTCCGATCGCGCCTTACTTCGCGATGGACAACTTCGCCAGCCTGGAAGGCCAGGACTATTTCTATCTGTGCCGGCGC
CTGCCGGCCACCGCCGCCAACGTCGCGGGCAGCGAGATGTTCGTCTCGTTCCTCGACCAGCAGTTCAACCTCGGCCAGCT
CACCGACGAGGTGGTGGGCGGCACCGCGCTCTGCACCAACCGGCGGCTGCCGGAGCGCCTGATGTCGGGCAGCGCGCTGC
ACCTGGAAGGCGGCGGCCCGGTGAACCGGATCGTCGCGATGACCAAGCCGACCCAGCACCACACGCCGCCGCAGATCGGC
AGCCGCCCGTGGTCGCTGGTCTCGCAGCTCGCGCTCAACCACCTCTCGCTCGACGGCGGCGCGCTCGCGCTCGCCGCGCT
GAAGGACATCCTGCGGCTGCACGTCGGCCCGCATCGCGAGAGCGGCTGGAAGCAGATCGACGCGATCACCGAGCTGCGCA
GCCGCAGCATCATGCGCCACGTCGGGCGCGACGGCTGGCGCGGCTTCGTGCGCGGCTCGGAGCTGACGGTGGTGATGGAG
CCGATCGACATCGGCGCGGGCAGCGTGGTGCGGTTCTGCTCGGTGCTGCGCGAATTCCTGCGCGGCTACGCGAGCGTCAA
TCATCTGGTCGAAGTCGCGCTCGAAACGCGTAACCTGAAGGGGAGCCCCAAGCAATGGCAAGCATCGGCCGGCACCGCTA
TCGCACTGTAA