Detailed information of component protein


Summary

Component ID T6CP259637
Component protein type TssI
T6SS ID (Type) T6SS17510 experimental (Type Unknown)
Strain Burkholderia glumae BGR1
Replicon chromosome II
Sequence Protein sequence (881 a.a.); Nucleotide sequence (2643 bp)
Reference
experimental Experimental investigation has been performed on this T6SS
External database links

Locus tag (Gene) BGLU_RS21520
Coordinate (Strand) 891621..894263 (-)
NCBI ID WP_012733556.1
RefSeq NC_012721
Uniprot ID -
KEGG ID -
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
Phage_GPD PF05954.13 1.9e-38 51..392
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Outside 1-880 MSDLASADARSFSVNRLAPPEPAVYLHCAVFIDRHTVLGAETFRLQSFQGQESVSEPFEYQLELVANSDGERALPVRFDELIGRAITVGIGKQIDPDWSTSLFRAALEGGVAPDDTRLSLFNGIVTSFAVKNRGTYAITMKPALHRLGLTNNYRVFHGRTVWEMIELLLDAHHVAYAPFQHSQRNLAVIRRQDWMQAGETDLEFLKRLMSKALLHFYFVHSGNGHALVFSNTAQYPEAVPGGRPLRYTYSDARALGMEQEDVVGEFSMKKSMGSTGVHGVLTQQDGAWLANPVVEFNSFYADDNQDANPLPFNLYKSYQYGGSKEEAQSLSSITRSTLDGSRHELSGASNCARLRVGHRFRLTSGAGPTNPVEPFLEDGAFVLTAVQHQASADGSYRNQFQAGDAAYLITPYSIQATQQGSVLAEVVPDPAAQAQTAIDFGARQSFSTGGSSFSDALNDTAYPQTGVYVRFSTAPRDAAPVWVKLSGAMQTAPTVGSIVVVGRAQDESELPEIQNIIQTNGSQLVVPGSWLSSTRIGNNYSTSYGDNQSISYGAHSPVDLKQATRIVTDAYRSGRFDNTSFSEGAGYSFSTSSQRAPAASADSGELYGADPVAPDIVSASESFGSTYGRQIGSVSYNHSHFDKSISDAWVQTEQSTRYTGDSTSVSVGLSSTSMASMGTASSVSVTGTSISSNLVGASISANFTGSSISTSMTGSVIDSSIVGDTVRSSVSGNLMEDSVSGNTVRNTVSGNLVETSESGNVTRNSLSGDLIENTESGDITRDTIAGVVTENGVVVSRNGVKTEGAVEEMDVKGSHNLCVTAGSTTRVETSGATSQITTTAEITLVETAGPGARVSNNDETPHIDNIVTRIYMIEAMIIFM


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.9880 - -


  Protein sequence: 881 a.a.    

>T6CP259637 NC_012721:c894263-891621 [Burkholderia glumae BGR1] [TssI]
MSDLASADARSFSVNRLAPPEPAVYLHCAVFIDRHTVLGAETFRLQSFQGQESVSEPFEYQLELVANSDGERALPVRFDE
LIGRAITVGIGKQIDPDWSTSLFRAALEGGVAPDDTRLSLFNGIVTSFAVKNRGTYAITMKPALHRLGLTNNYRVFHGRT
VWEMIELLLDAHHVAYAPFQHSQRNLAVIRRQDWMQAGETDLEFLKRLMSKALLHFYFVHSGNGHALVFSNTAQYPEAVP
GGRPLRYTYSDARALGMEQEDVVGEFSMKKSMGSTGVHGVLTQQDGAWLANPVVEFNSFYADDNQDANPLPFNLYKSYQY
GGSKEEAQSLSSITRSTLDGSRHELSGASNCARLRVGHRFRLTSGAGPTNPVEPFLEDGAFVLTAVQHQASADGSYRNQF
QAGDAAYLITPYSIQATQQGSVLAEVVPDPAAQAQTAIDFGARQSFSTGGSSFSDALNDTAYPQTGVYVRFSTAPRDAAP
VWVKLSGAMQTAPTVGSIVVVGRAQDESELPEIQNIIQTNGSQLVVPGSWLSSTRIGNNYSTSYGDNQSISYGAHSPVDL
KQATRIVTDAYRSGRFDNTSFSEGAGYSFSTSSQRAPAASADSGELYGADPVAPDIVSASESFGSTYGRQIGSVSYNHSH
FDKSISDAWVQTEQSTRYTGDSTSVSVGLSSTSMASMGTASSVSVTGTSISSNLVGASISANFTGSSISTSMTGSVIDSS
IVGDTVRSSVSGNLMEDSVSGNTVRNTVSGNLVETSESGNVTRNSLSGDLIENTESGDITRDTIAGVVTENGVVVSRNGV
KTEGAVEEMDVKGSHNLCVTAGSTTRVETSGATSQITTTAEITLVETAGPGARVSNNDETPHIDNIVTRIYMIEAMIIFM
*

  Nucleotide sequence: 2643 bp    

>T6CP259637 NC_012721:c894263-891621 [Burkholderia glumae BGR1] [TssI]
ATGAGCGACCTGGCGAGCGCCGACGCGCGCAGCTTCTCCGTCAACCGGCTCGCGCCGCCCGAGCCGGCCGTCTACCTGCA
CTGCGCGGTGTTCATCGACCGCCACACCGTGCTCGGCGCCGAGACCTTCCGCCTGCAGAGCTTCCAGGGGCAGGAGAGCG
TGTCGGAGCCGTTCGAATACCAGCTGGAGCTGGTGGCCAACTCCGACGGCGAGCGCGCGCTGCCGGTGCGCTTCGACGAG
CTGATCGGCCGCGCCATCACGGTCGGCATCGGCAAGCAGATCGATCCCGACTGGAGCACCAGCCTGTTCCGCGCCGCGCT
CGAGGGCGGCGTCGCGCCGGACGACACGCGGCTGTCGCTGTTCAACGGCATCGTGACGAGCTTCGCGGTGAAGAACCGCG
GCACCTACGCCATCACGATGAAGCCGGCGCTGCACCGGCTCGGCCTGACCAACAACTACCGCGTGTTCCATGGCCGCACC
GTCTGGGAAATGATCGAGCTGCTGCTCGACGCGCACCACGTCGCCTACGCGCCGTTCCAGCACAGCCAGCGCAACCTCGC
CGTGATCCGCCGCCAGGACTGGATGCAGGCCGGCGAGACCGACCTCGAATTCCTCAAGCGGCTGATGAGCAAGGCGCTGC
TGCACTTCTACTTCGTGCATTCGGGCAACGGCCACGCGCTGGTGTTCTCCAACACCGCCCAGTATCCCGAGGCGGTGCCG
GGCGGCCGGCCGCTGCGCTACACCTACAGCGACGCGCGGGCGCTCGGCATGGAGCAGGAGGACGTCGTCGGCGAATTCAG
CATGAAGAAGTCGATGGGCAGCACCGGCGTGCACGGCGTGCTCACGCAGCAGGACGGCGCGTGGCTCGCCAACCCGGTGG
TCGAGTTCAACTCGTTCTACGCCGACGACAACCAGGACGCCAACCCGCTGCCGTTCAACCTCTACAAGAGCTACCAGTAC
GGCGGCAGCAAGGAGGAGGCGCAGAGCCTGTCGAGCATCACCCGCAGCACGCTCGACGGCAGCCGCCACGAGCTGTCGGG
CGCCAGCAACTGCGCGCGCTTGCGCGTCGGCCACCGCTTCAGGCTGACCAGCGGCGCGGGACCCACCAACCCGGTCGAGC
CGTTCCTCGAGGACGGCGCGTTCGTGCTGACCGCGGTCCAGCACCAGGCCAGCGCCGACGGCAGCTATCGCAACCAGTTC
CAGGCCGGCGACGCGGCCTACCTCATCACGCCCTACTCGATCCAGGCGACCCAGCAGGGCAGCGTGCTGGCCGAGGTGGT
GCCGGACCCGGCCGCGCAGGCGCAGACCGCCATCGATTTCGGCGCGCGGCAATCGTTCAGCACCGGCGGCAGCAGCTTCA
GCGACGCGCTGAACGACACCGCGTACCCGCAGACCGGCGTGTACGTGCGCTTCTCGACCGCCCCGCGCGACGCGGCCCCG
GTGTGGGTCAAGCTCTCCGGCGCGATGCAGACGGCGCCCACGGTGGGCTCGATCGTCGTGGTGGGACGCGCCCAGGACGA
ATCGGAGCTGCCGGAGATCCAGAACATCATCCAGACCAACGGCAGCCAGCTGGTGGTGCCGGGCAGCTGGCTCTCCAGCA
CGCGCATCGGCAACAACTACTCGACCAGCTACGGCGACAATCAGAGCATCAGCTACGGCGCCCACTCGCCCGTCGATCTC
AAGCAGGCGACGCGGATCGTCACCGACGCCTATCGGAGCGGCCGCTTCGACAACACCAGCTTCTCGGAGGGCGCCGGCTA
CAGCTTCAGCACCTCGAGCCAGCGCGCGCCGGCCGCGAGCGCCGACAGCGGCGAGCTGTACGGCGCCGACCCGGTGGCGC
CCGACATCGTGAGCGCCTCGGAATCGTTCGGCTCGACCTACGGCCGCCAGATCGGCAGCGTCAGCTACAACCATTCGCAC
TTCGACAAGTCGATCAGCGACGCCTGGGTGCAGACCGAGCAATCGACGCGCTACACGGGCGACAGCACCAGCGTCAGCGT
CGGCCTGAGCAGCACCTCGATGGCCTCGATGGGAACCGCGTCGTCGGTCTCGGTCACCGGCACCTCGATCAGCAGCAACC
TGGTCGGCGCCTCGATCTCCGCCAACTTCACCGGCTCGTCGATCAGCACCAGCATGACCGGCAGCGTGATCGACAGCTCG
ATCGTCGGCGACACGGTTCGCAGCTCGGTCTCCGGCAACCTGATGGAAGACAGCGTGTCCGGCAACACGGTCCGCAACAC
CGTCTCCGGCAACCTGGTCGAAACCAGCGAGTCCGGCAACGTCACGCGCAACTCGCTGTCGGGCGACCTGATCGAGAACA
CCGAGTCCGGCGACATCACGCGCGACACCATCGCCGGCGTCGTGACGGAAAACGGCGTGGTGGTGTCGCGCAACGGCGTG
AAGACCGAGGGCGCCGTCGAGGAAATGGACGTGAAGGGCTCGCACAACCTCTGCGTGACGGCGGGCAGCACCACCCGCGT
CGAGACCTCCGGCGCGACCTCGCAGATCACCACCACCGCCGAGATCACGCTGGTGGAAACCGCCGGCCCCGGCGCGCGCG
TGTCGAACAACGACGAAACCCCGCACATCGACAACATCGTCACGCGGATCTACATGATCGAAGCCATGATCATCTTCATG
TGA