Detailed information of component protein


Summary

Component ID T6CP259633
Component protein type TssA
T6SS ID (Type) T6SS17510 experimental (Type Unknown)
Strain Burkholderia glumae BGR1
Replicon chromosome II
Sequence Protein sequence (382 a.a.); Nucleotide sequence (1146 bp)
Reference
experimental Experimental investigation has been performed on this T6SS

External database links

Locus tag (Gene) BGLU_RS21475
Coordinate (Strand) 878998..880143 (-)
NCBI ID WP_012733547.1
RefSeq NC_012721
Uniprot ID A0A2J9HJ09_BURGL, C5AMV2_BURGB
KEGG ID bgl:bglu_2g07340
PDB ID -

Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
ImpA_N PF06812.14 3.4e-28 25..147

Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Outside 1-381 MNPSLLADARQHFEQTLRISFDALLAPVEMYPPCGRPARECRSYSQINQERRHDDPSLPLGAWQRDLKRTDWLKVSHLVADMLLHDSKDMQLLAWLYEAQIKQYGFAGIAPTLVLLREMVSRYWNEIHPFGSEGDFEHRANLIRSISDKHLAALRLTPLLRLEGGKTYCWADWERAHRHERMRAGGHAELPAEGATLEELQGALNATASADFLTLRARLCDALQAIAEMSAALDPRFGNEAPSMGKTIELLETIRSLVDGELHTRGVRTEPEAPLQADATADDAAPAATEPHDTPGAAAAAPGGGPIASRADAYARLEEIAEYLMRQEPHSPVPYLVRRATLWGRMNTAELYQELFLRLGGQLNIFEMVGIENPGSPERQA



Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.9805 - -



  Protein sequence: 382 a.a.    

>T6CP259633 NC_012721:c880143-878998 [Burkholderia glumae BGR1] [TssA]
MNPSLLADARQHFEQTLRISFDALLAPVEMYPPCGRPARECRSYSQINQERRHDDPSLPLGAWQRDLKRTDWLKVSHLVA
DMLLHDSKDMQLLAWLYEAQIKQYGFAGIAPTLVLLREMVSRYWNEIHPFGSEGDFEHRANLIRSISDKHLAALRLTPLL
RLEGGKTYCWADWERAHRHERMRAGGHAELPAEGATLEELQGALNATASADFLTLRARLCDALQAIAEMSAALDPRFGNE
APSMGKTIELLETIRSLVDGELHTRGVRTEPEAPLQADATADDAAPAATEPHDTPGAAAAAPGGGPIASRADAYARLEEI
AEYLMRQEPHSPVPYLVRRATLWGRMNTAELYQELFLRLGGQLNIFEMVGIENPGSPERQA*

  Nucleotide sequence: 1146 bp    

>T6CP259633 NC_012721:c880143-878998 [Burkholderia glumae BGR1] [TssA]
ATGAATCCATCGCTTCTTGCCGACGCCCGGCAGCATTTCGAACAGACCCTGCGGATTTCCTTCGACGCGCTGCTCGCGCC
GGTCGAGATGTACCCGCCGTGCGGACGGCCGGCGCGCGAGTGCCGCAGCTACAGCCAGATCAACCAGGAGCGGCGCCATG
ACGACCCGAGCCTGCCGCTCGGGGCCTGGCAGCGCGACCTGAAGCGCACCGACTGGCTCAAGGTCAGCCATCTGGTCGCG
GACATGCTGCTCCACGACAGCAAGGACATGCAGCTGCTGGCCTGGCTCTACGAGGCGCAGATCAAGCAATACGGCTTCGC
CGGCATCGCGCCGACGCTGGTGCTGCTGCGCGAGATGGTCTCGCGCTACTGGAACGAGATCCACCCGTTCGGGAGCGAGG
GCGATTTCGAGCATCGCGCCAACCTGATCCGCTCGATCTCCGACAAGCATCTCGCGGCGCTGCGGCTCACGCCGCTGCTG
CGCCTGGAGGGCGGCAAGACCTATTGCTGGGCCGACTGGGAGCGCGCGCATCGCCATGAGCGCATGCGCGCCGGCGGCCA
TGCCGAGCTGCCCGCCGAGGGCGCCACGCTGGAGGAGCTGCAGGGGGCGCTGAACGCCACCGCGAGCGCCGATTTCCTGA
CGCTGCGCGCGCGGCTCTGCGACGCGCTGCAGGCGATCGCCGAGATGAGCGCGGCGCTCGATCCGCGCTTCGGCAACGAG
GCGCCGAGCATGGGCAAGACCATCGAGCTGCTGGAGACGATCCGCTCGCTGGTCGACGGCGAACTGCACACGCGCGGCGT
GCGCACCGAGCCTGAAGCGCCGCTGCAGGCCGATGCCACGGCCGATGACGCCGCGCCCGCTGCAACCGAGCCGCACGACA
CGCCGGGCGCGGCCGCCGCCGCGCCTGGGGGCGGCCCGATCGCGAGCCGCGCCGACGCCTACGCGCGCCTCGAGGAAATC
GCCGAGTACCTGATGCGCCAGGAGCCGCACAGCCCGGTGCCGTACCTGGTGCGGCGCGCCACGCTGTGGGGCCGCATGAA
CACGGCCGAGCTGTATCAGGAGCTGTTCCTGAGGCTCGGCGGGCAGCTGAACATCTTCGAGATGGTGGGGATCGAGAATC
CCGGCAGCCCCGAACGGCAGGCATAA