Detailed information of component protein


Summary

Component ID T6CP259631
Component protein type TssH
T6SS ID (Type) T6SS17509 experimental (Type i2)
Strain Burkholderia glumae BGR1
Replicon chromosome II
Sequence Protein sequence (903 a.a.); Nucleotide sequence (2709 bp)
Reference
experimental Experimental investigation has been performed on this T6SS
External database links

Locus tag (Gene) BGLU_RS23290
Coordinate (Strand) 1419488..1422196 (+)
NCBI ID WP_012733891.1
RefSeq NC_012721
Uniprot ID -
KEGG ID -
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
AAA_2 PF07724.16 7.6e-39 619..783
AAA_lid_9 PF17871.3 2.5e-30 384..477
ClpB_D2-small PF10431.11 8.9e-11 790..862
AAA PF00004.31 1.6e-08 244..356
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Outside 1-902 MTLRDTTHLLRRLNPHCAKALEAAASLCQGRLSDEITVEHWLLKLIEAGDGDIPAILLHYRIGIDAVWDALIAAIERQPRLLRGKPALSPQLAAVLHDAWLHATSEIDEQAIRSGHLLQAIADAPHVLRAQHAWPLLSISSTQIQRLLPRLGHRSCESQPERVEAGADAEALAAAGEVRPAAAASDGARTPAPRRTVEGDALARFAIDLTDKARRGDIDPVFGRDREIQQMVDVLARRRKNNPILVGEPGVGKTALVEGLALRVAQANVPNVIREVRILTLDLGLLQAGAGVKGEFEQRLKNVIDEVQASPVPIMLFIDEAHTLIGAGNAAGGADAANLLKPALARGELRTIAATTWSEYKEFFERDAALERRFQIIKVDEPDDEAACLMLRGLRSRYAQHHRVHIRDEALVAAVRLSRRYIPARQLPDKAVDLIDTAAARVRMGLESPPAELQRARAAVSALELEYATLEDDARAGIDNAQARRASLEAALASAKSALADLQQRYDTELRLVQALHEQREVEPCARDGASFAQARQALAGAQGKTPLIFADVDAQAIARVVAEWTGVPVGNLVEDELQGLLALEAQLARRVVAQDDALAALAESLRTAKAGLRNEHAPLGVFLLAGPSGVGKTETALALADLLFGGEAALTTINMSEYQESHTVSQLKGSPPGYVGYGRGGILTEAVRQRPYSVVLLDEVEKAHRDVLDIFYQVFDRGTMRDGEGREIDFRNCVILMTSNLGSAQIDEAITDNPGIAQAALLDAIHPQLVAHFQPALLARFQTLVYRPLDASALASIMRLKLAKLAGRLRRQHDVELRCDESLIGAMAELCLARESGARSVDAFLDQRILPTVSRELLTRMASGLAPAKIALSSSAEGNLTIDFVDRGEPVDAAASEPSGA


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.9741 - -


  Protein sequence: 903 a.a.    

>T6CP259631 NC_012721:1419488-1422196 [Burkholderia glumae BGR1] [TssH]
MTLRDTTHLLRRLNPHCAKALEAAASLCQGRLSDEITVEHWLLKLIEAGDGDIPAILLHYRIGIDAVWDALIAAIERQPR
LLRGKPALSPQLAAVLHDAWLHATSEIDEQAIRSGHLLQAIADAPHVLRAQHAWPLLSISSTQIQRLLPRLGHRSCESQP
ERVEAGADAEALAAAGEVRPAAAASDGARTPAPRRTVEGDALARFAIDLTDKARRGDIDPVFGRDREIQQMVDVLARRRK
NNPILVGEPGVGKTALVEGLALRVAQANVPNVIREVRILTLDLGLLQAGAGVKGEFEQRLKNVIDEVQASPVPIMLFIDE
AHTLIGAGNAAGGADAANLLKPALARGELRTIAATTWSEYKEFFERDAALERRFQIIKVDEPDDEAACLMLRGLRSRYAQ
HHRVHIRDEALVAAVRLSRRYIPARQLPDKAVDLIDTAAARVRMGLESPPAELQRARAAVSALELEYATLEDDARAGIDN
AQARRASLEAALASAKSALADLQQRYDTELRLVQALHEQREVEPCARDGASFAQARQALAGAQGKTPLIFADVDAQAIAR
VVAEWTGVPVGNLVEDELQGLLALEAQLARRVVAQDDALAALAESLRTAKAGLRNEHAPLGVFLLAGPSGVGKTETALAL
ADLLFGGEAALTTINMSEYQESHTVSQLKGSPPGYVGYGRGGILTEAVRQRPYSVVLLDEVEKAHRDVLDIFYQVFDRGT
MRDGEGREIDFRNCVILMTSNLGSAQIDEAITDNPGIAQAALLDAIHPQLVAHFQPALLARFQTLVYRPLDASALASIMR
LKLAKLAGRLRRQHDVELRCDESLIGAMAELCLARESGARSVDAFLDQRILPTVSRELLTRMASGLAPAKIALSSSAEGN
LTIDFVDRGEPVDAAASEPSGA*

  Nucleotide sequence: 2709 bp    

>T6CP259631 NC_012721:1419488-1422196 [Burkholderia glumae BGR1] [TssH]
ATGACCCTGCGCGATACGACCCATCTGCTGCGCCGACTCAACCCGCACTGCGCGAAGGCGCTCGAGGCGGCCGCCAGTCT
TTGCCAGGGGAGGCTCTCGGACGAAATTACGGTTGAGCACTGGCTGTTGAAACTGATCGAGGCCGGCGACGGCGATATTC
CGGCGATCCTGCTGCATTACCGGATCGGCATCGATGCCGTCTGGGACGCGTTGATTGCCGCGATCGAACGCCAGCCCCGC
CTCCTGCGGGGCAAGCCGGCGCTCTCGCCGCAGCTGGCGGCCGTGCTTCACGACGCGTGGCTTCACGCCACGTCGGAGAT
CGACGAGCAGGCCATCCGGTCTGGCCACTTGCTGCAGGCCATCGCCGACGCGCCGCACGTGCTGCGCGCGCAGCATGCCT
GGCCGCTGCTGTCGATCAGCAGCACGCAGATCCAGCGGCTGCTACCGCGTCTCGGTCATCGGTCGTGCGAAAGCCAGCCG
GAGCGCGTGGAAGCTGGAGCGGATGCCGAGGCGCTCGCCGCGGCTGGTGAAGTCCGGCCGGCAGCCGCCGCGAGCGACGG
CGCTCGAACGCCCGCGCCTCGGCGGACCGTCGAGGGCGACGCGCTTGCGCGCTTCGCGATCGATCTGACCGACAAGGCGC
GCCGCGGCGACATCGATCCCGTCTTCGGCCGCGATCGCGAGATCCAGCAGATGGTCGACGTGCTCGCGCGCCGGCGCAAG
AACAATCCGATTCTCGTCGGCGAACCGGGCGTGGGCAAAACCGCGCTCGTCGAAGGTCTCGCGTTGCGCGTGGCGCAAGC
CAACGTCCCGAACGTGATCCGCGAGGTGCGTATCCTGACGCTCGACCTGGGCCTGCTGCAGGCCGGCGCCGGCGTGAAGG
GGGAGTTCGAGCAGCGCCTGAAGAACGTCATTGACGAAGTGCAGGCCTCGCCCGTGCCGATCATGCTCTTCATCGACGAA
GCGCACACGCTGATCGGCGCGGGCAATGCCGCCGGCGGCGCGGATGCCGCGAACCTGCTCAAGCCGGCGCTTGCGCGCGG
CGAGCTGCGCACGATCGCGGCCACCACGTGGTCCGAATACAAGGAATTCTTCGAGCGTGACGCCGCGCTCGAGCGCCGTT
TCCAGATCATCAAGGTCGACGAGCCCGACGATGAAGCGGCATGCCTGATGCTGCGAGGCCTCAGGAGCCGCTACGCGCAA
CATCACCGCGTCCACATCCGCGACGAGGCGCTCGTCGCCGCGGTGAGGCTGTCGCGTCGCTATATTCCCGCACGGCAGCT
ACCCGACAAGGCAGTCGACCTGATCGACACGGCGGCCGCGCGCGTACGCATGGGTCTGGAGTCGCCGCCAGCGGAACTGC
AGCGGGCGCGGGCCGCCGTGTCGGCGCTCGAGCTGGAGTATGCGACGCTGGAAGACGATGCACGCGCAGGCATCGATAAC
GCGCAGGCGCGCCGCGCCTCGCTCGAGGCAGCGCTCGCGAGCGCAAAGTCTGCCCTGGCCGATCTGCAGCAGCGTTATGA
CACGGAGCTCCGGCTCGTTCAGGCATTGCACGAGCAGCGTGAGGTCGAGCCGTGCGCCCGCGACGGCGCCTCGTTCGCAC
AGGCGCGACAGGCGCTCGCCGGCGCCCAGGGAAAAACGCCGCTGATCTTCGCCGATGTGGATGCGCAGGCGATCGCGCGC
GTCGTCGCCGAGTGGACGGGCGTGCCCGTCGGCAACCTCGTCGAGGACGAGCTGCAAGGCCTGCTTGCGCTCGAGGCACA
GCTCGCAAGGCGTGTGGTCGCCCAGGACGATGCCCTCGCCGCGCTCGCCGAGAGCCTGCGCACCGCGAAGGCGGGGCTCA
GGAACGAGCATGCGCCGCTCGGCGTGTTCCTGCTTGCCGGCCCCTCTGGCGTGGGCAAGACCGAAACCGCCCTGGCCCTG
GCCGACCTCCTGTTCGGGGGCGAGGCCGCGCTCACGACGATCAATATGTCGGAGTACCAGGAATCGCATACGGTGTCACA
GTTGAAAGGCTCGCCGCCGGGCTACGTCGGATATGGCCGTGGCGGGATTCTGACCGAGGCGGTGCGCCAGCGCCCATATA
GCGTCGTGCTGCTCGACGAGGTCGAGAAGGCCCACCGCGACGTGCTGGACATCTTTTACCAGGTGTTCGATCGCGGCACG
ATGCGCGACGGCGAGGGGCGCGAGATCGACTTCCGCAACTGCGTGATCCTGATGACGTCCAATCTCGGCAGCGCGCAGAT
CGACGAGGCGATCACCGACAATCCCGGGATTGCGCAGGCCGCGCTGCTCGATGCCATTCATCCGCAACTCGTCGCGCACT
TCCAGCCCGCCCTGCTCGCCCGCTTCCAGACGCTCGTGTACCGGCCGCTGGACGCATCCGCGCTCGCCTCCATCATGCGC
CTGAAGCTCGCCAAGCTTGCAGGCCGCCTGCGCCGTCAGCACGATGTCGAACTGAGGTGCGACGAGTCGCTGATCGGCGC
GATGGCCGAGCTGTGTCTCGCTCGCGAATCCGGCGCACGCAGCGTCGACGCCTTCCTCGACCAGCGCATCCTGCCTACGG
TGTCGCGCGAGTTGCTGACTCGCATGGCCAGCGGCCTCGCGCCGGCGAAGATCGCGCTGTCGAGTTCGGCCGAGGGCAAC
CTCACGATCGACTTCGTCGATCGCGGCGAACCGGTGGACGCCGCAGCCAGCGAGCCGTCCGGCGCCTGA