Detailed information of component protein
Summary
| Component ID | T6CP259630 |
| Component protein type | TssD |
| T6SS ID (Type) | T6SS17509  (Type i2) |
| Strain | Burkholderia glumae BGR1 |
| Replicon | chromosome II |
| Sequence | Protein sequence (162 a.a.); Nucleotide sequence (486 bp) |
| Reference |
Experimental investigation has been performed on this T6SSExternal database links
| Locus tag (Gene) | BGLU_RS23285 |
| Coordinate (Strand) | 1418865..1419350 (+) |
| NCBI ID | WP_012733890.1 |
| RefSeq | NC_012721 |
| Uniprot ID | - |
| KEGG ID | - |
| PDB ID | - |
Pfam domain hit(s)
| Domain | Pfam ID | E-value | Aligned region |
|---|---|---|---|
| T6SS_HCP | PF05638.14 | 3.5e-38 | 6..146 |
Transmembrane helices
- Transmembrane helices are predicted using TMHMM 2.0 software.
| Prediction | Region | Sequence |
|---|---|---|
| Outside | 1-161 | MAIPAYMWLKDDGGADIKGSVTVQGREGSVELVAFNHGVHIPTDGNTGKLTGTRVHKPITLTKETDASTPYLYKAVTSGQTLKSVEIKWYKIDDAGKEKEYFNTKLDNVKIVAVNPVMYDIKNPDYEKHNHLENVELRYETITWSYKDGNIIHKDTWNERS |
Signal peptides
- Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
- Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
- Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
| Prediction | Probability | Cleavage site | Signal peptide sequence |
|---|---|---|---|
| Other | 0.9832 | - | - |
Protein sequence: 162 a.a.
>T6CP259630 NC_012721:1418865-1419350 [Burkholderia glumae BGR1] [TssD]
MAIPAYMWLKDDGGADIKGSVTVQGREGSVELVAFNHGVHIPTDGNTGKLTGTRVHKPITLTKETDASTPYLYKAVTSGQ
TLKSVEIKWYKIDDAGKEKEYFNTKLDNVKIVAVNPVMYDIKNPDYEKHNHLENVELRYETITWSYKDGNIIHKDTWNER
S*
MAIPAYMWLKDDGGADIKGSVTVQGREGSVELVAFNHGVHIPTDGNTGKLTGTRVHKPITLTKETDASTPYLYKAVTSGQ
TLKSVEIKWYKIDDAGKEKEYFNTKLDNVKIVAVNPVMYDIKNPDYEKHNHLENVELRYETITWSYKDGNIIHKDTWNER
S*
Nucleotide sequence: 486 bp
>T6CP259630 NC_012721:1418865-1419350 [Burkholderia glumae BGR1] [TssD]
ATGGCAATTCCGGCCTATATGTGGCTCAAGGACGATGGCGGTGCCGACATCAAGGGTTCGGTGACGGTTCAGGGCCGAGA
AGGCAGCGTCGAGCTCGTCGCGTTCAATCACGGCGTGCACATCCCGACCGACGGCAACACGGGCAAGCTCACCGGTACGC
GTGTACACAAGCCGATTACGCTCACGAAGGAAACGGACGCGTCGACGCCATACCTGTACAAGGCCGTGACGAGCGGCCAG
ACGTTGAAGTCGGTCGAAATCAAGTGGTACAAGATCGACGACGCGGGCAAGGAGAAGGAGTACTTCAACACGAAGCTCGA
CAACGTCAAGATCGTGGCCGTCAACCCGGTGATGTACGACATCAAGAACCCGGACTACGAGAAACACAACCACCTCGAAA
ACGTCGAACTGCGCTACGAGACGATCACCTGGTCGTACAAGGACGGCAACATCATCCACAAGGACACCTGGAACGAGCGT
TCCTGA
ATGGCAATTCCGGCCTATATGTGGCTCAAGGACGATGGCGGTGCCGACATCAAGGGTTCGGTGACGGTTCAGGGCCGAGA
AGGCAGCGTCGAGCTCGTCGCGTTCAATCACGGCGTGCACATCCCGACCGACGGCAACACGGGCAAGCTCACCGGTACGC
GTGTACACAAGCCGATTACGCTCACGAAGGAAACGGACGCGTCGACGCCATACCTGTACAAGGCCGTGACGAGCGGCCAG
ACGTTGAAGTCGGTCGAAATCAAGTGGTACAAGATCGACGACGCGGGCAAGGAGAAGGAGTACTTCAACACGAAGCTCGA
CAACGTCAAGATCGTGGCCGTCAACCCGGTGATGTACGACATCAAGAACCCGGACTACGAGAAACACAACCACCTCGAAA
ACGTCGAACTGCGCTACGAGACGATCACCTGGTCGTACAAGGACGGCAACATCATCCACAAGGACACCTGGAACGAGCGT
TCCTGA