Detailed information of component protein


Summary

Component ID T6CP259629
Component protein type TssL
T6SS ID (Type) T6SS17509 experimental (Type i2)
Strain Burkholderia glumae BGR1
Replicon chromosome II
Sequence Protein sequence (603 a.a.); Nucleotide sequence (1809 bp)
Reference
experimental Experimental investigation has been performed on this T6SS
External database links

Locus tag (Gene) BGLU_RS23280
Coordinate (Strand) 1416959..1418767 (+)
NCBI ID WP_012733889.1
RefSeq NC_012721
Uniprot ID -
KEGG ID -
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
OmpA PF00691.22 8.2e-23 489..585
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Outside 1-23 VKPDLPVLPATPARDPDDGHEGL
Transmembrane helix 24-46 GYPFRMMIVFAAALALAVVWLVL
Inside 47-52 PLGRGA
Transmembrane helix 53-72 IWALTAVIGIVVLALTGWFT
Outside 73-374 RRLSRAREQSAHVLAALGAATADIPVRLRIRMPLVLITGDGLPALFNLTEAERFAHVGDGAIWLRVDRPQDLPRLAVAVRQWRDGRVPDGVVLCVAPALHAGPDVLTQKLRLVRQAVADAARTLGARLPGYVAVYQRLTAGEGSDVPHAIPGLAAAASANRAASQWYGVSSATRLVDAERFEPVIRAAEEAVQHASGDRLAATRAAALASIVGWTQRVVIGALTDRQQPAAPWALFGAGWIDCGPANAVGMSVDRGTGNPWQRDVEMQTRVEPADAEASALPWPFPQPLLAAMPRRLWVSPR
Transmembrane helix 375-397 MTAFAHALALAACAAAVAFWASA
Inside 398-602 KNNEALLNRIGADLGRYSTVPPAHDAAKRDALEALIADRDQLDRYARTGVPLRLSFGMYRGARLMPALNDAIASYVPPPPPPAVVTLDSMSLFDSGRSQLKPGSTRAMVGALEMIKAHPDKRILVAGYTDNSGNPNRNLKLSTARARAVRDWLIEASGIPTTQFAIQGYGDTRPIASNDTPEGRARNRRVEITLVPEIPKDGAGK


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.9716 - -


  Protein sequence: 603 a.a.    

>T6CP259629 NC_012721:1416959-1418767 [Burkholderia glumae BGR1] [TssL]
VKPDLPVLPATPARDPDDGHEGLGYPFRMMIVFAAALALAVVWLVLPLGRGAIWALTAVIGIVVLALTGWFTRRLSRARE
QSAHVLAALGAATADIPVRLRIRMPLVLITGDGLPALFNLTEAERFAHVGDGAIWLRVDRPQDLPRLAVAVRQWRDGRVP
DGVVLCVAPALHAGPDVLTQKLRLVRQAVADAARTLGARLPGYVAVYQRLTAGEGSDVPHAIPGLAAAASANRAASQWYG
VSSATRLVDAERFEPVIRAAEEAVQHASGDRLAATRAAALASIVGWTQRVVIGALTDRQQPAAPWALFGAGWIDCGPANA
VGMSVDRGTGNPWQRDVEMQTRVEPADAEASALPWPFPQPLLAAMPRRLWVSPRMTAFAHALALAACAAAVAFWASAKNN
EALLNRIGADLGRYSTVPPAHDAAKRDALEALIADRDQLDRYARTGVPLRLSFGMYRGARLMPALNDAIASYVPPPPPPA
VVTLDSMSLFDSGRSQLKPGSTRAMVGALEMIKAHPDKRILVAGYTDNSGNPNRNLKLSTARARAVRDWLIEASGIPTTQ
FAIQGYGDTRPIASNDTPEGRARNRRVEITLVPEIPKDGAGK*

  Nucleotide sequence: 1809 bp    

>T6CP259629 NC_012721:1416959-1418767 [Burkholderia glumae BGR1] [TssL]
GTGAAGCCCGACCTGCCGGTTCTGCCCGCCACGCCGGCGCGCGATCCTGATGACGGACACGAAGGGCTCGGTTATCCGTT
TCGGATGATGATCGTGTTCGCCGCTGCGCTCGCGCTCGCGGTGGTCTGGCTCGTGCTGCCGCTCGGCCGTGGCGCGATCT
GGGCGCTCACCGCGGTCATCGGCATCGTCGTGCTCGCGCTGACGGGGTGGTTCACCCGCCGGCTGTCGCGCGCACGCGAG
CAGAGCGCGCACGTGCTTGCCGCGCTCGGCGCAGCGACTGCGGATATTCCCGTCAGGCTGCGCATACGCATGCCGCTTGT
CCTGATCACCGGCGATGGCTTGCCTGCCTTGTTCAACCTCACCGAAGCGGAACGCTTCGCGCATGTCGGCGATGGGGCGA
TCTGGCTGCGCGTCGATCGTCCTCAGGATCTGCCGCGCCTCGCCGTCGCGGTCCGGCAGTGGCGCGACGGTCGCGTGCCC
GATGGCGTCGTGCTTTGTGTGGCGCCGGCTCTGCACGCGGGGCCGGACGTCCTGACGCAGAAACTGCGATTGGTCCGTCA
GGCGGTCGCCGACGCGGCGCGAACGCTGGGCGCGCGTCTGCCCGGCTACGTCGCTGTCTATCAGCGGCTGACGGCTGGAG
AAGGTTCCGACGTTCCGCATGCGATCCCCGGTTTGGCGGCCGCGGCCAGCGCGAATCGCGCGGCATCGCAATGGTATGGC
GTTTCCTCGGCGACGCGCCTGGTCGACGCCGAGCGCTTCGAGCCGGTGATCCGTGCCGCCGAAGAGGCGGTCCAGCACGC
GTCGGGCGACCGGCTAGCCGCTACCCGCGCAGCCGCCCTGGCGTCAATCGTTGGATGGACGCAGCGCGTCGTGATCGGTG
CGCTGACGGACCGGCAGCAGCCGGCCGCGCCCTGGGCACTGTTCGGTGCCGGCTGGATTGACTGCGGACCCGCGAACGCC
GTGGGCATGTCGGTCGATCGGGGCACGGGGAATCCATGGCAACGCGACGTCGAGATGCAGACCCGGGTCGAGCCCGCCGA
TGCCGAGGCTTCGGCGCTGCCATGGCCATTCCCGCAGCCCTTGCTCGCGGCGATGCCACGCCGGCTGTGGGTGTCGCCGC
GCATGACGGCCTTCGCCCATGCGCTCGCGCTTGCCGCGTGTGCGGCCGCCGTGGCGTTCTGGGCGTCGGCGAAAAACAAC
GAGGCGTTACTAAACCGTATCGGCGCCGACCTCGGACGCTATTCAACGGTCCCGCCCGCGCACGACGCCGCGAAGCGCGA
CGCGTTGGAGGCGCTGATCGCGGATCGGGATCAACTCGACCGATATGCACGCACCGGCGTACCGCTTCGCCTGTCGTTCG
GCATGTACCGGGGCGCCCGGCTGATGCCGGCGCTCAACGATGCGATCGCCTCCTACGTGCCCCCGCCTCCGCCGCCCGCG
GTCGTCACGCTCGACAGCATGTCGCTGTTCGACAGCGGCCGCTCGCAACTGAAACCGGGTTCGACACGAGCGATGGTCGG
TGCGCTCGAAATGATCAAGGCGCATCCGGATAAACGGATTCTCGTGGCCGGATACACCGACAACTCGGGCAATCCGAACC
GCAACCTGAAGCTGTCGACGGCACGCGCGCGGGCGGTGCGCGACTGGCTGATCGAGGCCTCGGGCATCCCGACCACGCAG
TTTGCCATCCAGGGCTACGGCGACACGCGACCGATCGCGAGCAACGACACGCCGGAAGGACGCGCCAGGAACCGGCGCGT
GGAAATCACGCTGGTCCCGGAGATTCCGAAGGACGGCGCCGGGAAATGA