Detailed information of component protein


Summary

Component ID T6CP259627
Component protein type TssK
T6SS ID (Type) T6SS17509 experimental (Type i2)
Strain Burkholderia glumae BGR1
Replicon chromosome II
Sequence Protein sequence (451 a.a.); Nucleotide sequence (1353 bp)
Reference
experimental Experimental investigation has been performed on this T6SS
External database links

Locus tag (Gene) BGLU_RS23270
Coordinate (Strand) 1414882..1416234 (+)
NCBI ID WP_012733887.1
RefSeq NC_012721
Uniprot ID -
KEGG ID -
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
T6SS_VasE PF05936.14 1.1e-123 18..447
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Outside 1-450 MRIDKPLWHEGLVLTQQHFQQQDRWAGFAMQQVAAAALAEPWGTLGVEVDEEALATGRLKLTRLKLRFPDGTPVDTTMADEVPPARELTQGMPADCQSVVVLAALALPDANGNNCRFDETTLARPRRSYREFVKVTDLNGTGESEIAAERHAVRLLFDFESHADDTVCAVARLTRSTSGLFQVDHRFVPPCLTLGSHRLHLERVNRLADILQAKSLALGARRSERIEQVAEYGVADVQLFWLLHCIHAAWPQLRLFATHPNRPPEHLYVTLAQLASALMTFSTGAQLTDIPAYDHARADEVFAQLESMIRDLLDAIIPSRVVSIGLTRKSPTTWSGQFLDERIVGDAADWYLSVNAPMPVFELVEQFPRLCKIGAPDDVERIINSALLGIPLKAVQRVPAAIPVRLDNQYFALDSTSAAHAEMLAARACQIYLPASVPDASLELYAVLRS


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.9015 - -


  Protein sequence: 451 a.a.    

>T6CP259627 NC_012721:1414882-1416234 [Burkholderia glumae BGR1] [TssK]
MRIDKPLWHEGLVLTQQHFQQQDRWAGFAMQQVAAAALAEPWGTLGVEVDEEALATGRLKLTRLKLRFPDGTPVDTTMAD
EVPPARELTQGMPADCQSVVVLAALALPDANGNNCRFDETTLARPRRSYREFVKVTDLNGTGESEIAAERHAVRLLFDFE
SHADDTVCAVARLTRSTSGLFQVDHRFVPPCLTLGSHRLHLERVNRLADILQAKSLALGARRSERIEQVAEYGVADVQLF
WLLHCIHAAWPQLRLFATHPNRPPEHLYVTLAQLASALMTFSTGAQLTDIPAYDHARADEVFAQLESMIRDLLDAIIPSR
VVSIGLTRKSPTTWSGQFLDERIVGDAADWYLSVNAPMPVFELVEQFPRLCKIGAPDDVERIINSALLGIPLKAVQRVPA
AIPVRLDNQYFALDSTSAAHAEMLAARACQIYLPASVPDASLELYAVLRS*

  Nucleotide sequence: 1353 bp    

>T6CP259627 NC_012721:1414882-1416234 [Burkholderia glumae BGR1] [TssK]
ATGCGGATCGACAAACCGCTCTGGCATGAGGGCTTGGTCCTCACGCAGCAGCACTTTCAGCAGCAGGACCGATGGGCGGG
ATTCGCGATGCAGCAGGTCGCGGCCGCTGCGCTCGCCGAACCATGGGGCACCCTAGGCGTCGAGGTCGACGAGGAGGCCC
TGGCAACGGGGCGCCTCAAGCTCACGCGGCTCAAGCTGCGCTTCCCGGACGGGACGCCGGTCGACACGACGATGGCCGAT
GAGGTTCCGCCAGCACGCGAACTGACACAAGGCATGCCTGCCGATTGTCAAAGCGTCGTGGTGCTCGCCGCGCTCGCGCT
ACCGGATGCGAACGGCAACAACTGCCGCTTCGATGAAACCACGCTTGCGCGTCCGCGTCGCTCGTACCGCGAGTTCGTCA
AGGTGACGGACCTGAACGGGACGGGTGAGTCGGAGATCGCCGCCGAGCGGCACGCCGTGCGGCTCCTGTTCGACTTCGAG
TCCCATGCCGACGATACTGTCTGCGCGGTCGCACGGCTTACCCGCAGCACGAGCGGCCTGTTCCAGGTCGATCATCGGTT
CGTGCCGCCATGCCTGACGCTCGGCAGCCATCGGCTTCACCTGGAGCGCGTCAATCGCCTCGCCGACATCCTGCAGGCGA
AAAGTCTTGCGCTCGGCGCGCGCCGCAGCGAGCGCATCGAACAGGTGGCCGAATATGGCGTGGCTGACGTCCAGCTCTTT
TGGCTGCTGCATTGCATTCATGCAGCATGGCCGCAACTGAGGCTATTTGCCACTCATCCGAACCGGCCGCCGGAGCATCT
GTATGTCACGCTGGCACAGCTCGCCAGTGCGTTGATGACATTCTCGACGGGTGCCCAGCTGACCGACATTCCCGCGTACG
ACCACGCACGTGCCGACGAGGTGTTCGCACAGCTCGAATCGATGATTCGTGATCTGCTCGACGCGATCATCCCTTCACGA
GTGGTGTCGATCGGCCTGACCCGCAAGAGCCCTACGACGTGGAGCGGCCAGTTCCTCGACGAACGCATCGTCGGCGATGC
AGCCGACTGGTATCTGTCCGTCAACGCACCGATGCCTGTGTTCGAGCTGGTCGAGCAGTTCCCGCGGCTGTGCAAGATCG
GCGCGCCAGACGACGTCGAGCGCATCATCAACTCGGCGCTGCTGGGAATTCCGCTGAAGGCGGTGCAGCGCGTGCCGGCC
GCGATTCCCGTGCGCCTTGACAACCAGTATTTCGCACTGGATTCGACCAGCGCTGCGCACGCGGAGATGCTCGCCGCGCG
GGCCTGCCAGATCTATCTTCCCGCGTCCGTACCCGACGCCTCGCTTGAACTTTACGCGGTGCTGCGCTCATGA