Detailed information of component protein


Summary

Component ID T6CP259625
Component protein type TssC
T6SS ID (Type) T6SS17509 experimental (Type i2)
Strain Burkholderia glumae BGR1
Replicon chromosome II
Sequence Protein sequence (511 a.a.); Nucleotide sequence (1533 bp)
Reference
experimental Experimental investigation has been performed on this T6SS
External database links

Locus tag (Gene) BGLU_RS23260
Coordinate (Strand) 1412299..1413831 (-)
NCBI ID WP_012733885.1
RefSeq NC_012721
Uniprot ID -
KEGG ID -
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
VipB PF05943.14 1.2e-121 87..385
VipB_2 PF18945.2 7e-40 394..505
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Outside 1-510 MKQNESRQGVNETVVLENDSVYASLCSKINLTPVAEARPLEAFRDNDMLSEASADERIARGMSAFLDLIAQSSQPVERLDKSLLDFHIGQLDRQISRQLDAVMHTPAFQALEGRWRGLKMLVARTDFRKNAKIEVLDVSKEALQRDFEDTPELIQSGLYRLTYIEEYDTPGGQPISAMISDFEFTNSPMDVALLRNISKVAAAAHMPFIGSVGAAFFGKQSMEEVAAIQDIGNYFDRAEYIKWKSFRETDDARYVGLTMPRVLGRLPYGKDTTPVRAFNYEEAVKGPDHDRYLWVNASFAFAANMVRSFVNNGWCVQIRGPQAGGKVEDLPVHLYDLGTGVQPKIPTEVLIPETREFEFANLGFIPLSFYKNHDFACFFSASSTQKPALYETKEATANSRINARLPYIFLLSRIAHYLKLIQRENIGTTKDRRLLELELNNWIKGLVTEMKDPDDELQASHPLRDAKVTVEDIDDNPGFFRIKLFIIPHFQVEGMDIGLSLVSQMPKAKS


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.9797 - -


  Protein sequence: 511 a.a.    

>T6CP259625 NC_012721:c1413831-1412299 [Burkholderia glumae BGR1] [TssC]
MKQNESRQGVNETVVLENDSVYASLCSKINLTPVAEARPLEAFRDNDMLSEASADERIARGMSAFLDLIAQSSQPVERLD
KSLLDFHIGQLDRQISRQLDAVMHTPAFQALEGRWRGLKMLVARTDFRKNAKIEVLDVSKEALQRDFEDTPELIQSGLYR
LTYIEEYDTPGGQPISAMISDFEFTNSPMDVALLRNISKVAAAAHMPFIGSVGAAFFGKQSMEEVAAIQDIGNYFDRAEY
IKWKSFRETDDARYVGLTMPRVLGRLPYGKDTTPVRAFNYEEAVKGPDHDRYLWVNASFAFAANMVRSFVNNGWCVQIRG
PQAGGKVEDLPVHLYDLGTGVQPKIPTEVLIPETREFEFANLGFIPLSFYKNHDFACFFSASSTQKPALYETKEATANSR
INARLPYIFLLSRIAHYLKLIQRENIGTTKDRRLLELELNNWIKGLVTEMKDPDDELQASHPLRDAKVTVEDIDDNPGFF
RIKLFIIPHFQVEGMDIGLSLVSQMPKAKS*

  Nucleotide sequence: 1533 bp    

>T6CP259625 NC_012721:c1413831-1412299 [Burkholderia glumae BGR1] [TssC]
ATGAAGCAGAATGAATCCCGTCAGGGTGTGAACGAAACCGTCGTGCTGGAAAACGACAGCGTGTATGCCTCGCTCTGCAG
CAAGATCAACCTCACGCCGGTCGCCGAGGCGCGTCCGCTCGAGGCCTTCCGCGACAACGACATGCTCTCCGAAGCGTCAG
CCGACGAGCGTATCGCGCGCGGCATGAGCGCCTTCCTGGATCTGATCGCGCAGTCGAGCCAGCCGGTCGAGCGCCTCGAC
AAATCGCTGCTGGACTTCCATATCGGCCAGCTCGACCGCCAGATCAGCCGCCAGCTCGACGCCGTGATGCACACGCCGGC
GTTCCAGGCGCTCGAGGGGCGCTGGCGCGGTCTCAAGATGCTCGTCGCGCGCACGGACTTTCGCAAGAACGCGAAGATCG
AGGTGCTCGACGTGTCGAAGGAGGCGCTGCAGCGCGACTTCGAGGACACGCCGGAACTGATCCAGAGCGGCCTGTATCGC
CTCACCTACATCGAGGAGTACGACACGCCGGGAGGCCAGCCGATCAGCGCGATGATCAGCGACTTCGAGTTCACGAACTC
GCCGATGGACGTGGCGCTGCTGCGTAACATCTCGAAGGTGGCGGCGGCGGCCCACATGCCGTTCATCGGCTCGGTGGGCG
CAGCGTTCTTCGGCAAGCAGTCGATGGAAGAGGTGGCGGCCATTCAGGACATCGGCAACTACTTCGACCGCGCCGAGTAC
ATCAAATGGAAGAGCTTCCGTGAAACCGATGACGCCCGTTATGTCGGCCTGACGATGCCGCGCGTGCTCGGCCGCCTGCC
GTATGGCAAGGACACCACGCCGGTGCGTGCCTTCAATTACGAGGAGGCGGTGAAGGGCCCGGACCACGACCGGTACCTGT
GGGTCAACGCGTCGTTCGCGTTCGCGGCCAATATGGTGCGCAGCTTCGTGAACAACGGCTGGTGCGTGCAGATTCGCGGC
CCGCAGGCGGGCGGCAAGGTGGAGGACCTGCCGGTGCATCTGTATGACCTGGGCACCGGCGTGCAGCCGAAGATCCCGAC
CGAGGTGCTGATCCCCGAGACACGCGAGTTCGAGTTCGCGAATCTCGGCTTCATCCCGCTGTCGTTCTACAAGAACCACG
ACTTCGCGTGCTTCTTCTCGGCCAGCTCGACGCAGAAGCCGGCGTTGTACGAGACCAAGGAGGCGACGGCCAACAGCCGC
ATCAACGCGCGCCTGCCTTACATCTTCCTGCTGTCGCGCATCGCGCATTACCTGAAGCTGATCCAGCGCGAGAACATCGG
CACGACCAAGGACCGGCGTCTGCTCGAGCTCGAGCTGAACAACTGGATCAAGGGGCTCGTGACCGAGATGAAGGATCCGG
ACGACGAACTGCAGGCCTCGCATCCGCTGCGCGACGCGAAGGTCACGGTCGAGGACATCGATGACAACCCGGGCTTCTTC
CGCATCAAGCTCTTCATCATTCCGCACTTCCAGGTGGAGGGGATGGACATCGGCCTGTCGCTGGTTTCGCAGATGCCCAA
GGCCAAGAGTTAA