Detailed information of component protein


Summary

Component ID T6CP259624
Component protein type TssI
T6SS ID (Type) T6SS17509 experimental (Type i2)
Strain Burkholderia glumae BGR1
Replicon chromosome II
Sequence Protein sequence (787 a.a.); Nucleotide sequence (2361 bp)
Reference
experimental Experimental investigation has been performed on this T6SS
External database links

Locus tag (Gene) BGLU_RS23255
Coordinate (Strand) 1409841..1412201 (-)
NCBI ID WP_012733884.1
RefSeq NC_012721
Uniprot ID -
KEGG ID -
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
Phage_GPD PF05954.13 1.6e-58 30..348
DUF2345 PF10106.11 6e-50 604..750
T6SS_Vgr PF13296.8 2e-31 484..585
Phage_base_V PF04717.14 1.1e-05 416..466
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Outside 1-786 MSSILPTQAYELKLAPHPAPFSVLEFSGRDAVSELYHYDIEFTSPAAGIPMEQVVGRPARFTIAPIDPNMGYLRKMFGENAEQFSKMPPAHTIHGIITEFDEFATTADQTHYRVRLEPVLADLHRGVTSRLFQKQSIEEIVTDTLRHYGYRVGVDFVFQLRHQYKRHEYVTQYHETTFAFIQRLCAQEGIWFRWEQKKDHAVIVFGDDLDAYARKQRTVPYLRDAGLESSGADTIKTLEKRTRRVPEAVRLHDYNHREAGVSLLVEENAARADKSTNGVDYRWGEHYETPEEGRQIARRRHEAYLANQITFKGTGNPFWLEAGEVMRVEPVQADAKHGIFITAVESSGGRSQSYWVSFEGIPSDRAYRTPIASIKRPAIDGILPARITSPGNYKYAYLTEQGWYVIKLPFDLDEWSPGGTSRPVRFAKPYSGDSYGHHFPLIDGAEVAIVFTDGNPDRPVIIGAMHDSLHPDLVNNLNHTRNIVRTAAQNELRMEDKENVEHIHLTTPFQTSELNLGHMVDGDRKERGQGAELRTDERVAVRGAKGVFISADAQYAARGKQLDMEPAQGLLEQALQQMQSLAGAAKASQAIAADYEKQKALFDKTLNELRKAGILVSAPAGVGLVSGDHMQFSADQNLIATAGGNADFGIIKRFTVAAGEAVSVFAQKLGLKFVAAKGKVEIHAQTDEIDMAAMKDITISSAEGRLVISAAKEVWIGAGGSYIKINANRIENGTPGDILEKCASWDKPGASSMRLPAPDLQSGDIKGCSWRSAAAAADSAATVVLE


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.9663 - -


  Protein sequence: 787 a.a.    

>T6CP259624 NC_012721:c1412201-1409841 [Burkholderia glumae BGR1] [TssI]
MSSILPTQAYELKLAPHPAPFSVLEFSGRDAVSELYHYDIEFTSPAAGIPMEQVVGRPARFTIAPIDPNMGYLRKMFGEN
AEQFSKMPPAHTIHGIITEFDEFATTADQTHYRVRLEPVLADLHRGVTSRLFQKQSIEEIVTDTLRHYGYRVGVDFVFQL
RHQYKRHEYVTQYHETTFAFIQRLCAQEGIWFRWEQKKDHAVIVFGDDLDAYARKQRTVPYLRDAGLESSGADTIKTLEK
RTRRVPEAVRLHDYNHREAGVSLLVEENAARADKSTNGVDYRWGEHYETPEEGRQIARRRHEAYLANQITFKGTGNPFWL
EAGEVMRVEPVQADAKHGIFITAVESSGGRSQSYWVSFEGIPSDRAYRTPIASIKRPAIDGILPARITSPGNYKYAYLTE
QGWYVIKLPFDLDEWSPGGTSRPVRFAKPYSGDSYGHHFPLIDGAEVAIVFTDGNPDRPVIIGAMHDSLHPDLVNNLNHT
RNIVRTAAQNELRMEDKENVEHIHLTTPFQTSELNLGHMVDGDRKERGQGAELRTDERVAVRGAKGVFISADAQYAARGK
QLDMEPAQGLLEQALQQMQSLAGAAKASQAIAADYEKQKALFDKTLNELRKAGILVSAPAGVGLVSGDHMQFSADQNLIA
TAGGNADFGIIKRFTVAAGEAVSVFAQKLGLKFVAAKGKVEIHAQTDEIDMAAMKDITISSAEGRLVISAAKEVWIGAGG
SYIKINANRIENGTPGDILEKCASWDKPGASSMRLPAPDLQSGDIKGCSWRSAAAAADSAATVVLE*

  Nucleotide sequence: 2361 bp    

>T6CP259624 NC_012721:c1412201-1409841 [Burkholderia glumae BGR1] [TssI]
ATGTCGTCGATCCTGCCTACCCAGGCCTACGAGTTGAAGCTCGCACCGCATCCGGCGCCGTTCTCGGTGCTCGAGTTCAG
CGGCCGGGACGCCGTGAGCGAGCTGTATCACTACGACATCGAGTTCACCAGCCCGGCAGCGGGCATCCCGATGGAGCAGG
TGGTCGGCCGGCCCGCGAGATTCACCATCGCTCCGATTGACCCGAACATGGGCTACCTGCGCAAGATGTTCGGTGAGAAC
GCGGAGCAGTTCAGCAAGATGCCGCCCGCGCACACCATCCACGGCATCATCACGGAATTCGATGAATTCGCCACGACGGC
CGACCAGACGCACTACCGGGTGCGGCTCGAGCCGGTGCTCGCCGACCTGCACCGGGGCGTGACGAGCCGGCTGTTCCAGA
AGCAGTCGATCGAGGAAATCGTGACCGACACGCTGCGCCATTACGGCTACCGCGTCGGCGTCGACTTCGTGTTCCAACTG
CGCCACCAGTACAAGCGGCACGAATACGTGACGCAGTACCACGAGACCACGTTTGCCTTCATCCAGCGCCTCTGTGCGCA
GGAGGGCATCTGGTTCCGCTGGGAGCAGAAGAAGGATCACGCGGTGATCGTGTTCGGCGACGATCTCGATGCCTATGCAC
GCAAACAGCGCACGGTGCCTTACCTGCGAGACGCCGGACTCGAGAGCTCAGGCGCGGACACGATCAAGACGCTAGAAAAG
CGGACCCGGCGCGTACCCGAAGCCGTGCGGTTGCACGACTACAACCATCGCGAGGCGGGCGTATCGCTGCTCGTCGAGGA
AAACGCCGCGCGTGCCGACAAGTCGACGAACGGTGTCGACTACCGCTGGGGCGAGCATTACGAAACGCCGGAGGAGGGCA
GGCAGATCGCCCGCCGGCGCCATGAGGCGTATCTGGCGAACCAGATCACCTTCAAGGGCACCGGCAATCCGTTCTGGCTG
GAGGCGGGCGAAGTCATGCGTGTCGAGCCGGTCCAGGCCGACGCGAAGCACGGGATCTTCATCACCGCGGTGGAATCGAG
CGGCGGCCGTAGCCAATCGTACTGGGTGAGCTTCGAGGGGATTCCGTCCGATCGCGCGTATCGAACGCCGATCGCCTCGA
TCAAGCGACCGGCCATTGACGGCATCCTGCCGGCCCGCATTACATCGCCGGGCAACTACAAATACGCGTACCTGACCGAG
CAGGGCTGGTACGTGATCAAGCTGCCGTTCGACCTCGACGAGTGGAGTCCGGGCGGTACGAGCCGGCCGGTGCGGTTTGC
CAAGCCGTACAGCGGGGACAGCTACGGGCACCACTTCCCGCTGATCGACGGTGCGGAAGTCGCCATCGTCTTTACCGATG
GCAATCCGGACCGGCCCGTGATCATCGGGGCCATGCACGACAGCCTGCATCCGGATCTTGTCAATAACCTCAATCACACC
CGCAACATCGTTCGCACCGCGGCGCAGAACGAGCTGCGGATGGAGGATAAGGAAAACGTCGAGCACATCCACCTGACGAC
GCCGTTCCAGACCAGTGAGCTCAATCTCGGGCACATGGTCGATGGGGACCGCAAGGAACGCGGACAAGGCGCGGAATTGC
GGACTGACGAGCGTGTGGCGGTGCGTGGCGCGAAGGGTGTTTTTATTTCGGCGGATGCCCAGTACGCCGCGCGCGGCAAG
CAGCTCGACATGGAGCCGGCCCAAGGACTCCTCGAACAGGCGCTACAGCAGATGCAATCGCTGGCCGGCGCGGCGAAAGC
TTCTCAGGCGATCGCTGCCGATTACGAGAAGCAGAAGGCATTATTCGACAAGACCCTGAACGAACTCAGGAAGGCAGGCA
TCCTCGTCAGCGCACCGGCGGGTGTTGGTCTCGTATCGGGGGACCACATGCAGTTCAGTGCCGACCAGAATCTCATTGCC
ACGGCGGGAGGCAACGCTGATTTTGGGATCATCAAGCGCTTTACCGTCGCTGCCGGGGAAGCGGTTTCCGTGTTCGCCCA
GAAGCTCGGCCTGAAATTCGTTGCGGCGAAGGGGAAGGTCGAAATTCACGCCCAGACGGACGAAATCGACATGGCTGCCA
TGAAGGACATCACGATTTCGAGCGCCGAGGGGCGGCTCGTAATTTCGGCAGCCAAGGAGGTCTGGATCGGGGCGGGTGGC
TCGTACATCAAGATCAACGCAAATCGCATCGAGAACGGTACGCCAGGCGATATTCTCGAAAAGTGCGCATCGTGGGACAA
GCCGGGCGCATCTTCAATGCGTTTGCCTGCACCGGACCTGCAGTCCGGAGATATCAAGGGGTGTTCATGGCGATCGGCAG
CCGCGGCGGCCGATAGTGCAGCAACCGTGGTGCTGGAGTAA