Detailed information of component protein


Summary

Component ID T6CP259623
Component protein type PAAR
T6SS ID (Type) T6SS17509 experimental (Type i2)
Strain Burkholderia glumae BGR1
Replicon chromosome II
Sequence Protein sequence (84 a.a.); Nucleotide sequence (252 bp)
Reference
experimental Experimental investigation has been performed on this T6SS
External database links

Locus tag (Gene) BGLU_RS32925
Coordinate (Strand) 1404933..1405184 (-)
NCBI ID WP_012733880.1
RefSeq NC_012721
Uniprot ID -
KEGG ID -
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
PAAR_motif PF05488.15 1.1e-21 8..80
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Outside 1-83 MIDLIRLGDSTDHDGKVISASKTMRFDGRWVARKGDEVSCPKHPDIKPNLIIDGDESMADDGVPIARHGYRAMCGCRVISSLI


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.9816 - -


  Protein sequence: 84 a.a.    

>T6CP259623 NC_012721:c1405184-1404933 [Burkholderia glumae BGR1] [PAAR]
MIDLIRLGDSTDHDGKVISASKTMRFDGRWVARKGDEVSCPKHPDIKPNLIIDGDESMADDGVPIARHGYRAMCGCRVIS
SLI*

  Nucleotide sequence: 252 bp    

>T6CP259623 NC_012721:c1405184-1404933 [Burkholderia glumae BGR1] [PAAR]
ATGATTGATCTTATTCGACTAGGCGATTCCACCGACCACGATGGCAAAGTCATCAGCGCATCCAAGACCATGCGCTTTGA
CGGCCGCTGGGTTGCCCGTAAGGGCGACGAGGTGTCCTGTCCGAAGCATCCCGACATCAAACCCAATCTCATCATCGATG
GTGATGAGTCAATGGCGGACGATGGCGTGCCGATTGCACGGCACGGCTATCGGGCAATGTGCGGTTGCCGTGTGATTTCG
AGTCTCATCTGA