Detailed information of component protein


Summary

Component ID T6CP259621
Component protein type TssA
T6SS ID (Type) T6SS17509 experimental (Type i2)
Strain Burkholderia glumae BGR1
Replicon chromosome II
Sequence Protein sequence (529 a.a.); Nucleotide sequence (1587 bp)
Reference
experimental Experimental investigation has been performed on this T6SS
External database links

Locus tag (Gene) BGLU_RS23220
Coordinate (Strand) 1397235..1398821 (-)
NCBI ID WP_012733878.1
RefSeq NC_012721
Uniprot ID -
KEGG ID -
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
T6SS_VasJ PF16989.7 3.4e-78 218..487
ImpA_N PF06812.14 7e-17 34..136
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Outside 1-528 MMLGGLFKRLFPTRDDAEQLARTRLDAWHAWLLPLAGDTGVGRDPGYEDTFFALREETQKLSGIDDGLIVSGCEQLLKETGKDLRLAGYYAFARLRQDGPSGFADGLELAAALVDRYGETVLPARAEAKRGALEMLATTRMIEMLESRGAFAPADLERALAALDVLVACTQTWSDAARPNLQALISRFERNNEPALTAEQGAAVPSPLSAATAAFGTITSARDLLDQARTMAVWLRDQENGYLPSVRLVRSVRWDTLHEVPPADAASHTRLVAPRGELRQQMKRLVLQKQWHELLERVEGAFMEGVNHLWFDLQYFQHVALDHIGAPYSGWRAQLRADFALFLERLPGIERLAFADGTPFADDATLEWIARHAVVRDLEAGESVAPLPVSAESVGDAAGDWPEIEAQARELAGREGVEAAFAWLEALPGMKTDRHRYLQRLVMARLADQASRPDTALALLAELDASSRTLPLTRWEPALVFEVKQQLVRALKAMSNRKDADKPALARRIGELQAELTVLDPARALTLS


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.9828 - -


  Protein sequence: 529 a.a.    

>T6CP259621 NC_012721:c1398821-1397235 [Burkholderia glumae BGR1] [TssA]
MMLGGLFKRLFPTRDDAEQLARTRLDAWHAWLLPLAGDTGVGRDPGYEDTFFALREETQKLSGIDDGLIVSGCEQLLKET
GKDLRLAGYYAFARLRQDGPSGFADGLELAAALVDRYGETVLPARAEAKRGALEMLATTRMIEMLESRGAFAPADLERAL
AALDVLVACTQTWSDAARPNLQALISRFERNNEPALTAEQGAAVPSPLSAATAAFGTITSARDLLDQARTMAVWLRDQEN
GYLPSVRLVRSVRWDTLHEVPPADAASHTRLVAPRGELRQQMKRLVLQKQWHELLERVEGAFMEGVNHLWFDLQYFQHVA
LDHIGAPYSGWRAQLRADFALFLERLPGIERLAFADGTPFADDATLEWIARHAVVRDLEAGESVAPLPVSAESVGDAAGD
WPEIEAQARELAGREGVEAAFAWLEALPGMKTDRHRYLQRLVMARLADQASRPDTALALLAELDASSRTLPLTRWEPALV
FEVKQQLVRALKAMSNRKDADKPALARRIGELQAELTVLDPARALTLS*

  Nucleotide sequence: 1587 bp    

>T6CP259621 NC_012721:c1398821-1397235 [Burkholderia glumae BGR1] [TssA]
ATGATGCTGGGCGGACTGTTCAAACGCCTTTTTCCGACCCGCGACGACGCCGAGCAGCTCGCGCGGACGCGGCTCGACGC
GTGGCATGCGTGGCTGCTGCCGCTCGCGGGTGACACGGGCGTGGGGCGCGACCCGGGCTACGAGGATACGTTCTTCGCGC
TTCGGGAGGAGACGCAAAAGCTCTCCGGCATCGACGACGGCCTCATCGTGAGTGGCTGTGAGCAGTTGCTCAAGGAGACC
GGCAAGGATCTGCGTCTGGCCGGTTACTACGCGTTCGCGCGGCTGCGGCAGGACGGACCTTCCGGCTTTGCCGACGGGCT
CGAGCTGGCCGCGGCGCTCGTCGACCGCTACGGCGAGACCGTGTTGCCCGCACGCGCCGAGGCAAAAAGGGGCGCGCTCG
AGATGCTGGCGACCACGCGCATGATCGAGATGCTGGAAAGCCGTGGCGCGTTCGCACCGGCTGACCTCGAGCGCGCACTG
GCCGCGCTCGACGTGCTGGTGGCCTGCACGCAGACCTGGTCCGACGCCGCGCGCCCGAACCTGCAAGCGCTCATCTCTCG
CTTCGAGCGAAACAATGAGCCCGCTCTCACGGCCGAGCAGGGCGCCGCCGTGCCTTCACCGCTTTCCGCGGCGACGGCTG
CCTTCGGCACGATCACGTCGGCGCGGGACCTGCTCGATCAGGCGCGCACGATGGCGGTGTGGCTGCGCGATCAGGAAAAC
GGCTATCTGCCGTCGGTGCGGCTCGTGCGCAGTGTGCGCTGGGATACGCTGCACGAAGTGCCGCCGGCCGATGCCGCCTC
GCATACGCGCCTCGTCGCGCCTCGCGGCGAACTTCGCCAGCAGATGAAACGGCTCGTGCTGCAGAAGCAGTGGCACGAAC
TGCTCGAACGCGTCGAAGGCGCGTTCATGGAGGGCGTCAACCATCTGTGGTTCGACCTGCAGTATTTCCAGCACGTCGCG
CTCGACCATATCGGTGCGCCGTATAGCGGATGGCGCGCACAGCTGCGCGCAGACTTTGCGCTCTTCCTCGAACGACTGCC
CGGCATCGAACGGCTGGCGTTCGCCGACGGCACGCCGTTCGCCGACGATGCAACGCTCGAGTGGATCGCGCGGCACGCGG
TAGTGCGCGATCTGGAAGCGGGCGAGTCTGTCGCTCCGCTGCCGGTCTCGGCCGAGAGCGTCGGCGATGCCGCCGGCGAC
TGGCCGGAAATCGAGGCGCAGGCGCGGGAACTGGCCGGGCGCGAGGGTGTGGAAGCCGCCTTCGCTTGGCTTGAGGCACT
GCCAGGCATGAAGACGGACCGCCATCGCTATCTGCAGCGGCTGGTGATGGCGCGCCTGGCCGATCAGGCCAGCCGCCCGG
ATACGGCACTGGCGCTGCTGGCCGAGCTCGACGCCTCGTCCCGGACACTGCCGCTCACGCGCTGGGAGCCGGCGCTGGTG
TTCGAGGTCAAGCAGCAGCTGGTCCGCGCATTGAAGGCGATGAGCAACCGCAAGGATGCCGACAAGCCGGCGCTGGCCCG
CCGCATCGGTGAACTGCAGGCGGAACTGACCGTGCTCGATCCGGCGCGTGCCCTGACTCTCTCATAA