Detailed information of component protein


Summary

Component ID T6CP259620
Component protein type TssF
T6SS ID (Type) T6SS17509 experimental (Type i2)
Strain Burkholderia glumae BGR1
Replicon chromosome II
Sequence Protein sequence (605 a.a.); Nucleotide sequence (1815 bp)
Reference
experimental Experimental investigation has been performed on this T6SS
External database links

Locus tag (Gene) BGLU_RS23215
Coordinate (Strand) 1395408..1397222 (-)
NCBI ID WP_012733877.1
RefSeq NC_012721
Uniprot ID -
KEGG ID -
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
T6SS_TssF PF05947.14 6.6e-183 4..600
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Outside 1-604 MENDDPILRYYEAEMRYLRESGREFAKAHPDRARLLNLDRVGDRDPYVERLFEGFAFLTGRLRQKLDDELPELTEGLVSLLWPHYLRMIPSLSVVQLIPLADKLQKTEIVPAGVPVRSAPIAIPPPAGADGSVPKTVQCLYRTTQAVTLQPLSITHAGPSVRHDGRSVIRIGFALDGSARRNETDLTRLRVHLNADLPTAFAMHLALTRQVDAITWRIPEIRDGEAVPLSGVTIEPAGFSTEERLWPKAEAAFSGYQLLLEYFTFREKFLFVDLRGVDITKLPASATRFELEIVLKQAYPSDQRFSAENLRLFCSPVINLFELDAEPIVIDHHETEYRVVPAGHQGGHVETYSVDAIATFDHDTAERYEYVPFATFRHRGGMLRHEAPERYFHTRVRPGVSGLHETWVILGGHAWETMDTLPEESLSLRVTGTNGLLPRKGLREASLDELAASPPNVAGVRNLVSPTLPLYPPTEDRFQWRVLSHLAPNFLSMMNAEVLRGALALYDWTDDELNRRRLAGIRWVSQELIEEVTGGSVERGVLIEVTLDSHAFSGEGDVMLFGELLHRFFAQYAEINLFTKLSIVSLPSQTRTIWPRSKAQRAPL


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.9973 - -


  Protein sequence: 605 a.a.    

>T6CP259620 NC_012721:c1397222-1395408 [Burkholderia glumae BGR1] [TssF]
MENDDPILRYYEAEMRYLRESGREFAKAHPDRARLLNLDRVGDRDPYVERLFEGFAFLTGRLRQKLDDELPELTEGLVSL
LWPHYLRMIPSLSVVQLIPLADKLQKTEIVPAGVPVRSAPIAIPPPAGADGSVPKTVQCLYRTTQAVTLQPLSITHAGPS
VRHDGRSVIRIGFALDGSARRNETDLTRLRVHLNADLPTAFAMHLALTRQVDAITWRIPEIRDGEAVPLSGVTIEPAGFS
TEERLWPKAEAAFSGYQLLLEYFTFREKFLFVDLRGVDITKLPASATRFELEIVLKQAYPSDQRFSAENLRLFCSPVINL
FELDAEPIVIDHHETEYRVVPAGHQGGHVETYSVDAIATFDHDTAERYEYVPFATFRHRGGMLRHEAPERYFHTRVRPGV
SGLHETWVILGGHAWETMDTLPEESLSLRVTGTNGLLPRKGLREASLDELAASPPNVAGVRNLVSPTLPLYPPTEDRFQW
RVLSHLAPNFLSMMNAEVLRGALALYDWTDDELNRRRLAGIRWVSQELIEEVTGGSVERGVLIEVTLDSHAFSGEGDVML
FGELLHRFFAQYAEINLFTKLSIVSLPSQTRTIWPRSKAQRAPL*

  Nucleotide sequence: 1815 bp    

>T6CP259620 NC_012721:c1397222-1395408 [Burkholderia glumae BGR1] [TssF]
ATGGAAAACGACGACCCGATTCTGCGCTACTACGAGGCGGAAATGCGCTATTTGCGCGAGTCCGGCAGGGAGTTCGCGAA
AGCGCATCCCGATCGCGCGCGCCTGCTCAACCTCGATCGCGTGGGCGACCGCGATCCGTATGTCGAGCGGCTGTTCGAGG
GCTTTGCATTCCTGACCGGCCGGCTTCGACAGAAACTCGACGATGAACTGCCGGAGCTCACCGAGGGACTCGTGAGCCTC
CTATGGCCGCACTATCTGCGGATGATCCCGTCGCTGTCGGTGGTCCAGCTGATCCCGCTCGCGGACAAGCTGCAAAAAAC
CGAGATCGTGCCGGCAGGCGTGCCGGTTCGCTCCGCGCCGATTGCGATACCGCCGCCGGCCGGCGCCGATGGCTCGGTGC
CGAAGACGGTTCAGTGTCTATACCGAACCACGCAGGCCGTGACGCTGCAGCCGCTTTCGATCACGCATGCCGGCCCGAGT
GTGCGCCATGACGGCCGTTCGGTGATCCGGATCGGGTTCGCGCTCGACGGGTCGGCGCGCCGCAACGAAACGGACCTGAC
GCGACTGCGCGTGCATCTGAATGCGGATCTGCCGACTGCGTTCGCAATGCATCTCGCGCTTACGCGCCAGGTCGATGCAA
TCACCTGGCGCATTCCGGAAATCCGCGACGGCGAAGCGGTGCCGCTCTCCGGCGTCACGATCGAGCCGGCCGGTTTTTCG
ACCGAAGAACGGCTGTGGCCGAAGGCCGAGGCGGCTTTCTCGGGCTACCAGCTGCTGCTCGAGTATTTTACGTTCCGCGA
GAAATTCCTGTTCGTCGACCTACGCGGAGTCGACATCACGAAGCTGCCCGCGAGCGCGACCCGCTTCGAGCTGGAAATCG
TATTGAAGCAGGCCTATCCGTCGGACCAGCGCTTCAGCGCCGAGAACCTGCGCCTCTTCTGCAGCCCGGTGATCAATCTG
TTCGAACTGGATGCCGAACCGATCGTGATCGATCATCACGAAACCGAATATCGCGTGGTGCCGGCAGGTCATCAGGGCGG
GCATGTCGAAACCTACTCGGTCGACGCCATTGCGACATTCGACCATGACACGGCCGAGCGATACGAATACGTGCCGTTCG
CTACCTTCCGGCACCGCGGCGGCATGTTGCGGCACGAGGCGCCGGAGCGCTATTTCCATACGCGCGTGCGACCGGGTGTG
TCCGGGCTGCACGAAACCTGGGTGATTCTCGGCGGTCATGCCTGGGAGACCATGGACACGCTGCCCGAGGAAAGCCTGTC
GCTGCGTGTGACGGGCACGAACGGACTGTTGCCGCGCAAGGGGCTGCGTGAAGCCAGCCTCGACGAGCTGGCGGCCAGCC
CCCCGAACGTCGCGGGCGTACGCAACCTCGTGTCGCCGACCTTGCCGCTGTATCCGCCGACCGAAGACCGTTTCCAGTGG
CGCGTGTTATCGCATCTGGCGCCGAACTTCCTGTCGATGATGAATGCGGAAGTGCTGCGCGGTGCACTCGCACTGTACGA
CTGGACCGACGACGAGCTGAATCGCCGCCGGCTGGCCGGCATCCGGTGGGTCTCGCAGGAGCTCATCGAGGAGGTGACGG
GCGGCTCGGTCGAGCGTGGCGTGCTGATCGAGGTGACGCTCGATTCGCATGCGTTTTCGGGCGAGGGCGACGTGATGCTG
TTCGGCGAGCTGCTGCACCGGTTCTTCGCGCAGTACGCGGAAATCAACCTGTTCACCAAGCTGTCGATCGTGAGCCTGCC
GTCGCAGACCCGCACGATCTGGCCGCGCAGCAAAGCGCAGCGGGCTCCGCTATGA