Detailed information of component protein
Summary
| Component ID | T6CP259619 |
| Component protein type | TssG |
| T6SS ID (Type) | T6SS17509  (Type i2) |
| Strain | Burkholderia glumae BGR1 |
| Replicon | chromosome II |
| Sequence | Protein sequence (374 a.a.); Nucleotide sequence (1122 bp) |
| Reference |
Experimental investigation has been performed on this T6SSExternal database links
| Locus tag (Gene) | BGLU_RS23210 |
| Coordinate (Strand) | 1394290..1395411 (-) |
| NCBI ID | WP_012733876.1 |
| RefSeq | NC_012721 |
| Uniprot ID | - |
| KEGG ID | - |
| PDB ID | - |
Pfam domain hit(s)
| Domain | Pfam ID | E-value | Aligned region |
|---|---|---|---|
| T6SS_TssG | PF06996.13 | 4e-75 | 29..341 |
Transmembrane helices
- Transmembrane helices are predicted using TMHMM 2.0 software.
| Prediction | Region | Sequence |
|---|---|---|
| Outside | 1-373 | MSAREPKEVSLGDELPNLEPLVASLLARAPRMNFMQLCRLLEAQVPDAPGFGTRDSLEHERVRFRPRPRLGFPAGEMASVELDDARPDAPPTIRTTFMGLYGVDAAVPAHMIDEIVRREEGHEAVEAFLDQFNHRYVTLLYRAWKKYRYPESFRAGGADAHSRNLLCLAGFGWGDKPRRAGLPDSRMLALLGLLIQHTRTPEGLAGVIALAVPGVGVRVDEFFPALTRAGQPRPLTSTGEAAAAEDGARRGLGGSYVLGRRIAYRSRAVRVTLRPADARQAHDLLPGAWLHRELMAFVQLYVGVKADVHLRMEISSRLAPEPAIGPASTGPAPRLGWTTVLRAAEARLVNIALGVYEAFPTPAPNPYLAARHG |
Signal peptides
- Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
- Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
- Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
| Prediction | Probability | Cleavage site | Signal peptide sequence |
|---|---|---|---|
| Other | 0.9884 | - | - |
Protein sequence: 374 a.a.
>T6CP259619 NC_012721:c1395411-1394290 [Burkholderia glumae BGR1] [TssG]
MSAREPKEVSLGDELPNLEPLVASLLARAPRMNFMQLCRLLEAQVPDAPGFGTRDSLEHERVRFRPRPRLGFPAGEMASV
ELDDARPDAPPTIRTTFMGLYGVDAAVPAHMIDEIVRREEGHEAVEAFLDQFNHRYVTLLYRAWKKYRYPESFRAGGADA
HSRNLLCLAGFGWGDKPRRAGLPDSRMLALLGLLIQHTRTPEGLAGVIALAVPGVGVRVDEFFPALTRAGQPRPLTSTGE
AAAAEDGARRGLGGSYVLGRRIAYRSRAVRVTLRPADARQAHDLLPGAWLHRELMAFVQLYVGVKADVHLRMEISSRLAP
EPAIGPASTGPAPRLGWTTVLRAAEARLVNIALGVYEAFPTPAPNPYLAARHG*
MSAREPKEVSLGDELPNLEPLVASLLARAPRMNFMQLCRLLEAQVPDAPGFGTRDSLEHERVRFRPRPRLGFPAGEMASV
ELDDARPDAPPTIRTTFMGLYGVDAAVPAHMIDEIVRREEGHEAVEAFLDQFNHRYVTLLYRAWKKYRYPESFRAGGADA
HSRNLLCLAGFGWGDKPRRAGLPDSRMLALLGLLIQHTRTPEGLAGVIALAVPGVGVRVDEFFPALTRAGQPRPLTSTGE
AAAAEDGARRGLGGSYVLGRRIAYRSRAVRVTLRPADARQAHDLLPGAWLHRELMAFVQLYVGVKADVHLRMEISSRLAP
EPAIGPASTGPAPRLGWTTVLRAAEARLVNIALGVYEAFPTPAPNPYLAARHG*
Nucleotide sequence: 1122 bp
>T6CP259619 NC_012721:c1395411-1394290 [Burkholderia glumae BGR1] [TssG]
ATGAGCGCGCGCGAACCGAAGGAAGTCTCCTTGGGGGACGAACTGCCGAATCTCGAGCCACTCGTCGCGTCGCTGCTCGC
TCGCGCGCCCCGCATGAATTTCATGCAGCTGTGTCGGCTGCTCGAGGCGCAGGTGCCGGATGCCCCCGGTTTCGGCACGC
GCGACTCGCTCGAGCATGAGCGGGTGCGTTTTCGGCCGCGGCCCCGCCTGGGCTTTCCGGCCGGAGAAATGGCGTCGGTC
GAGCTTGACGACGCACGGCCTGACGCGCCGCCCACCATACGGACGACGTTCATGGGTCTGTACGGCGTCGACGCGGCGGT
GCCGGCGCACATGATCGACGAGATCGTGCGGCGGGAGGAGGGGCATGAGGCGGTTGAAGCGTTTCTCGACCAGTTCAACC
ACCGGTACGTCACGCTGCTATACCGCGCTTGGAAGAAGTACCGCTATCCGGAAAGCTTCCGCGCAGGCGGCGCCGACGCG
CATTCCCGCAATCTGCTGTGCCTGGCCGGGTTCGGCTGGGGCGACAAGCCGCGGCGCGCCGGTCTGCCGGATTCGCGGAT
GCTCGCGCTACTGGGGCTGCTGATCCAGCATACGCGCACGCCCGAGGGCCTCGCCGGCGTGATCGCGCTGGCCGTGCCCG
GCGTCGGCGTACGCGTCGACGAATTCTTTCCGGCGCTCACGCGTGCCGGACAGCCGCGGCCGCTGACATCCACGGGCGAA
GCCGCTGCGGCGGAAGACGGGGCGCGCCGGGGGCTGGGGGGCAGCTACGTGCTCGGCCGGCGCATCGCCTACCGCAGCCG
CGCGGTGCGAGTCACGCTGCGCCCGGCTGATGCCCGGCAGGCCCACGACCTCCTGCCTGGCGCGTGGCTGCATCGCGAGC
TGATGGCGTTCGTGCAACTGTACGTGGGGGTGAAAGCCGACGTGCACCTGCGCATGGAGATTTCCTCCCGGCTTGCGCCC
GAGCCTGCCATCGGCCCGGCCTCAACCGGTCCGGCGCCGCGCCTTGGCTGGACGACCGTGCTGCGCGCCGCCGAGGCACG
CCTCGTCAACATCGCACTCGGCGTCTACGAGGCATTTCCCACGCCCGCGCCCAATCCATATTTGGCTGCACGACATGGCT
GA
ATGAGCGCGCGCGAACCGAAGGAAGTCTCCTTGGGGGACGAACTGCCGAATCTCGAGCCACTCGTCGCGTCGCTGCTCGC
TCGCGCGCCCCGCATGAATTTCATGCAGCTGTGTCGGCTGCTCGAGGCGCAGGTGCCGGATGCCCCCGGTTTCGGCACGC
GCGACTCGCTCGAGCATGAGCGGGTGCGTTTTCGGCCGCGGCCCCGCCTGGGCTTTCCGGCCGGAGAAATGGCGTCGGTC
GAGCTTGACGACGCACGGCCTGACGCGCCGCCCACCATACGGACGACGTTCATGGGTCTGTACGGCGTCGACGCGGCGGT
GCCGGCGCACATGATCGACGAGATCGTGCGGCGGGAGGAGGGGCATGAGGCGGTTGAAGCGTTTCTCGACCAGTTCAACC
ACCGGTACGTCACGCTGCTATACCGCGCTTGGAAGAAGTACCGCTATCCGGAAAGCTTCCGCGCAGGCGGCGCCGACGCG
CATTCCCGCAATCTGCTGTGCCTGGCCGGGTTCGGCTGGGGCGACAAGCCGCGGCGCGCCGGTCTGCCGGATTCGCGGAT
GCTCGCGCTACTGGGGCTGCTGATCCAGCATACGCGCACGCCCGAGGGCCTCGCCGGCGTGATCGCGCTGGCCGTGCCCG
GCGTCGGCGTACGCGTCGACGAATTCTTTCCGGCGCTCACGCGTGCCGGACAGCCGCGGCCGCTGACATCCACGGGCGAA
GCCGCTGCGGCGGAAGACGGGGCGCGCCGGGGGCTGGGGGGCAGCTACGTGCTCGGCCGGCGCATCGCCTACCGCAGCCG
CGCGGTGCGAGTCACGCTGCGCCCGGCTGATGCCCGGCAGGCCCACGACCTCCTGCCTGGCGCGTGGCTGCATCGCGAGC
TGATGGCGTTCGTGCAACTGTACGTGGGGGTGAAAGCCGACGTGCACCTGCGCATGGAGATTTCCTCCCGGCTTGCGCCC
GAGCCTGCCATCGGCCCGGCCTCAACCGGTCCGGCGCCGCGCCTTGGCTGGACGACCGTGCTGCGCGCCGCCGAGGCACG
CCTCGTCAACATCGCACTCGGCGTCTACGAGGCATTTCCCACGCCCGCGCCCAATCCATATTTGGCTGCACGACATGGCT
GA