Detailed information of component protein


Summary

Component ID T6CP259617
Component protein type TssI
T6SS ID (Type) T6SS17509 experimental (Type i2)
Strain Burkholderia glumae BGR1
Replicon chromosome II
Sequence Protein sequence (1018 a.a.); Nucleotide sequence (3054 bp)
Reference
experimental Experimental investigation has been performed on this T6SS
External database links

Locus tag (Gene) BGLU_RS23160
Coordinate (Strand) 1382281..1385334 (+)
NCBI ID WP_012733868.1
RefSeq NC_012721
Uniprot ID -
KEGG ID -
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
Phage_GPD PF05954.13 1e-82 45..355
DUF2345 PF10106.11 5.6e-53 669..818
T6SS_Vgr PF13296.8 4.8e-34 524..629
Phage_base_V PF04717.14 8.6e-12 436..503
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Outside 1-1017 MGLQVDIQSIMSALRGGLLQQDRLLKLDTPLPADTLIVSRAVGHARLGRDVEWTLDVVSTVSNLELKALIAQPVTLWIQQGDGGYRPVHGYVLVVRRLGSDGAMTLYQLRFTSALHFLRYRRDERYWQDQAADAIIADVLNRHPQLQGRFRFDLSRKLPTRSYCRQHETDWNFVHRLMESEGLYCYWEYASDGSSQTMVIVDALYATPAPFDVWFQRQGTHVEADALGHWASSRVLQSAHHTTRTFDYKNPSTPYNPKGTTLPTRADQGELPQQLEVYEYTGAYAYAEHERGESLSQIQVEEWESRAKRFHGSGGVRAIDAGRRFVLHGHPEHDRDRAQQREFVAIDVQWTIQNNVAIPDFRFPHSLAEAPEFARAASGGQAQTVMHADGSTGFYHVDIEAQRTTVPYRSPLEHEKPEMHLETATVVGPSGEEVYTDELNRVKVRFHWDRQNDGDERASCWLRVAQSDSGSGYGGVHLPRVGEEVGVGYFGGDCDRPIVLFRVFNGKTRPQWHSNGILSGFRTKEYAGSGFNELVMDDATGQNRAKLASSVGSTALHLGYLIDQQGNLRGNYLGSGFDLRTDHYGAVRANRGLYVTTHAKGAASQPLDAGETQRQLESAGSLMDTLSQAGVEHHAEGLDSGRAALKSLLDATRLDAAGAVLGGRTAGGGTGKANAFAEPVMMFGSPAGIGLSTQQAAQIHADQQINLVSGESLHLAAGKSLIASVAQKLSLFVQSAGMKLFAGKGKVEIQAHSDNVEVTAQQTVKVLSSGAGVEVAAKDGILLTSGNAYIRIKDGNIEIHAPGKVDVKGAEHLFAGPQGTHYPLPPLPQGELIGKHSLRFATFGADQLADDIGWTNKPFQIVNTASEVLAAGQIAADGRLPRTLVDAAQTLVLKVGTGKWETHEVVAETPGSEPADGPSADPAGIAAAPSAAGAVVPPPGMAAGSTLGGAGESLPGSSEHADDADDAVRINSDATLSPQDDPYFLPAEEQEGQFIDTQHLAALLTQTVLEKVSEGEQ


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.9946 - -


  Protein sequence: 1018 a.a.    

>T6CP259617 NC_012721:1382281-1385334 [Burkholderia glumae BGR1] [TssI]
MGLQVDIQSIMSALRGGLLQQDRLLKLDTPLPADTLIVSRAVGHARLGRDVEWTLDVVSTVSNLELKALIAQPVTLWIQQ
GDGGYRPVHGYVLVVRRLGSDGAMTLYQLRFTSALHFLRYRRDERYWQDQAADAIIADVLNRHPQLQGRFRFDLSRKLPT
RSYCRQHETDWNFVHRLMESEGLYCYWEYASDGSSQTMVIVDALYATPAPFDVWFQRQGTHVEADALGHWASSRVLQSAH
HTTRTFDYKNPSTPYNPKGTTLPTRADQGELPQQLEVYEYTGAYAYAEHERGESLSQIQVEEWESRAKRFHGSGGVRAID
AGRRFVLHGHPEHDRDRAQQREFVAIDVQWTIQNNVAIPDFRFPHSLAEAPEFARAASGGQAQTVMHADGSTGFYHVDIE
AQRTTVPYRSPLEHEKPEMHLETATVVGPSGEEVYTDELNRVKVRFHWDRQNDGDERASCWLRVAQSDSGSGYGGVHLPR
VGEEVGVGYFGGDCDRPIVLFRVFNGKTRPQWHSNGILSGFRTKEYAGSGFNELVMDDATGQNRAKLASSVGSTALHLGY
LIDQQGNLRGNYLGSGFDLRTDHYGAVRANRGLYVTTHAKGAASQPLDAGETQRQLESAGSLMDTLSQAGVEHHAEGLDS
GRAALKSLLDATRLDAAGAVLGGRTAGGGTGKANAFAEPVMMFGSPAGIGLSTQQAAQIHADQQINLVSGESLHLAAGKS
LIASVAQKLSLFVQSAGMKLFAGKGKVEIQAHSDNVEVTAQQTVKVLSSGAGVEVAAKDGILLTSGNAYIRIKDGNIEIH
APGKVDVKGAEHLFAGPQGTHYPLPPLPQGELIGKHSLRFATFGADQLADDIGWTNKPFQIVNTASEVLAAGQIAADGRL
PRTLVDAAQTLVLKVGTGKWETHEVVAETPGSEPADGPSADPAGIAAAPSAAGAVVPPPGMAAGSTLGGAGESLPGSSEH
ADDADDAVRINSDATLSPQDDPYFLPAEEQEGQFIDTQHLAALLTQTVLEKVSEGEQ*

  Nucleotide sequence: 3054 bp    

>T6CP259617 NC_012721:1382281-1385334 [Burkholderia glumae BGR1] [TssI]
ATGGGATTGCAGGTGGATATTCAATCGATAATGTCCGCGCTACGCGGCGGTCTGCTTCAACAGGACCGGTTGCTCAAACT
CGATACGCCATTGCCGGCCGACACGTTGATCGTTTCGCGTGCCGTCGGCCATGCCCGGCTCGGCCGCGACGTCGAGTGGA
CGCTCGACGTCGTCTCGACGGTCAGCAACCTCGAGCTGAAGGCGCTGATCGCGCAGCCAGTCACGCTGTGGATCCAGCAG
GGCGACGGCGGCTATCGGCCGGTGCACGGCTACGTGCTGGTGGTGCGCCGGCTCGGCTCGGACGGCGCGATGACGCTCTA
CCAGTTGCGCTTTACCTCGGCCCTGCACTTCCTGCGCTACCGGCGCGACGAGCGCTACTGGCAGGACCAGGCCGCCGACG
CGATCATCGCCGACGTGCTGAACCGGCATCCGCAGCTGCAGGGCCGCTTTCGCTTCGATCTGTCGCGCAAGCTGCCGACG
CGCTCGTATTGCCGCCAGCACGAGACCGACTGGAACTTCGTGCACCGGCTGATGGAGTCCGAAGGGCTCTATTGCTACTG
GGAATATGCGTCGGACGGCAGCTCGCAGACGATGGTGATCGTCGACGCGCTGTACGCGACGCCGGCGCCGTTCGACGTCT
GGTTCCAGCGCCAGGGCACCCATGTCGAGGCCGACGCGCTGGGCCACTGGGCCAGCTCGCGCGTGCTGCAGAGCGCCCAC
CACACCACGCGCACGTTCGACTACAAGAATCCTTCCACGCCGTACAACCCGAAGGGCACCACGCTGCCCACGCGCGCCGA
TCAGGGCGAGCTGCCGCAACAGCTCGAGGTGTACGAATACACCGGCGCCTATGCCTACGCCGAGCACGAGCGCGGGGAAT
CGCTGTCGCAGATCCAGGTCGAGGAATGGGAATCGCGCGCCAAGCGCTTCCACGGCAGCGGCGGCGTGCGCGCGATCGAT
GCGGGCCGCCGCTTCGTGCTGCACGGCCACCCCGAGCACGATCGCGACCGCGCCCAGCAGCGCGAGTTCGTGGCGATCGA
CGTGCAGTGGACGATCCAGAACAACGTGGCGATCCCCGATTTCCGTTTTCCGCACAGTCTCGCCGAAGCGCCCGAGTTCG
CGCGCGCGGCAAGCGGCGGCCAGGCGCAGACGGTCATGCACGCCGACGGCTCGACCGGCTTCTATCACGTGGACATCGAG
GCGCAGCGCACGACCGTTCCGTATCGCAGCCCGCTCGAGCACGAGAAGCCCGAGATGCATCTGGAGACCGCCACCGTGGT
CGGCCCGAGCGGCGAGGAGGTGTATACCGACGAGCTGAACCGGGTCAAGGTGCGGTTCCACTGGGACCGCCAGAACGACG
GCGACGAGCGCGCCTCGTGCTGGCTGCGCGTGGCGCAGTCCGATTCCGGCAGCGGCTACGGCGGCGTGCACCTGCCGCGG
GTGGGCGAGGAGGTGGGGGTCGGCTATTTCGGCGGCGACTGCGACCGGCCGATCGTGCTGTTTCGCGTGTTCAACGGCAA
GACCCGGCCGCAGTGGCACAGCAACGGCATTCTGTCGGGCTTTCGCACCAAGGAATACGCGGGCAGCGGCTTCAACGAGC
TGGTGATGGACGACGCCACCGGCCAGAACCGCGCCAAGCTCGCGAGCAGCGTCGGCAGCACGGCGCTGCACCTGGGCTAC
CTGATCGACCAGCAGGGCAACCTGCGCGGCAACTATCTCGGCAGCGGCTTCGACCTGCGCACCGATCATTACGGCGCGGT
GCGCGCCAACCGCGGCCTGTACGTGACCACCCACGCGAAGGGCGCGGCGAGCCAGCCGCTCGACGCGGGCGAGACGCAGC
GGCAGCTCGAGAGCGCCGGCAGCCTGATGGATACGCTCTCGCAGGCCGGCGTCGAGCATCACGCCGAGGGGCTCGACAGC
GGGCGCGCGGCGCTGAAGTCGCTGCTCGACGCGACCCGGCTCGATGCCGCGGGCGCTGTGCTGGGCGGGCGCACCGCCGG
CGGCGGCACCGGCAAGGCGAATGCCTTCGCCGAGCCGGTGATGATGTTCGGCAGTCCGGCCGGGATCGGCCTGTCCACGC
AGCAGGCCGCGCAGATCCATGCGGACCAGCAGATCAACCTGGTCAGCGGCGAGAGCCTGCATCTCGCGGCCGGCAAGTCG
CTGATCGCGAGCGTCGCGCAGAAGCTGAGCCTGTTCGTGCAGAGCGCCGGGATGAAGCTGTTCGCCGGCAAGGGCAAGGT
CGAGATCCAGGCCCATTCCGACAACGTCGAGGTGACCGCGCAGCAGACCGTGAAGGTGCTGTCCTCCGGCGCGGGCGTCG
AGGTGGCCGCGAAGGACGGAATTCTGCTGACCTCGGGCAACGCCTACATTCGCATCAAGGACGGCAACATCGAGATCCAT
GCGCCGGGCAAGGTCGACGTGAAGGGCGCCGAGCACCTGTTCGCCGGTCCGCAGGGAACCCACTACCCGCTGCCGCCGCT
GCCGCAGGGCGAACTGATCGGCAAGCACAGCCTGCGCTTCGCGACCTTCGGCGCCGACCAGCTTGCCGACGACATCGGCT
GGACCAACAAGCCGTTCCAGATCGTCAACACCGCGAGCGAGGTGCTGGCGGCCGGGCAGATCGCGGCCGACGGCCGGCTG
CCGCGCACGCTCGTCGACGCCGCGCAGACGCTGGTGCTGAAGGTGGGCACCGGCAAATGGGAGACCCACGAAGTGGTGGC
CGAGACGCCCGGTTCGGAGCCGGCCGACGGCCCGAGCGCAGACCCCGCCGGTATCGCCGCGGCGCCGTCGGCAGCGGGGG
CCGTGGTTCCGCCGCCGGGCATGGCGGCCGGCAGCACGCTTGGCGGCGCGGGCGAGTCGCTGCCGGGCAGCAGCGAGCAC
GCCGATGATGCCGACGACGCCGTGCGCATCAACAGCGACGCCACGCTGAGCCCGCAGGACGATCCGTATTTCCTTCCGGC
AGAGGAGCAGGAAGGCCAGTTCATCGATACCCAGCATCTGGCGGCCCTGCTGACGCAGACCGTGCTGGAGAAGGTTAGTG
AAGGAGAGCAGTAA