Detailed information of component protein


Summary

Component ID T6CP259616
Component protein type TssH
T6SS ID (Type) T6SS17508 insolico (Type i3)
Strain Burkholderia glumae BGR1
Replicon chromosome II
Sequence Protein sequence (934 a.a.); Nucleotide sequence (2802 bp)
Reference
insolico Bioinformatics investigation has been performed on this T6SS
External database links

Locus tag (Gene) BGLU_RS18740
Coordinate (Strand) 185284..188085 (+)
NCBI ID WP_012733046.1
RefSeq NC_012721
Uniprot ID -
KEGG ID -
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
AAA_2 PF07724.16 4.8e-35 644..810
AAA_lid_9 PF17871.3 1.5e-25 374..461
ClpB_D2-small PF10431.11 9.4e-13 816..894
AAA PF00004.31 5.3e-11 232..364
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Outside 1-933 MVISRHALFGKLGTTLFRSLESATTFSKLRGNPYVELVHWLHQLIALADGDLQRIVRHCEIDRARLDRDLQDALAALPSGAGSLSDFSHHVDAAIERAWVLATLVFGEHRIRGAWLMAALIETPELRRVLLSCSREFGRIPVDGLHEALPAWIAGSPEADDTPYDHSDFSPAVPGEASDAMAAPARGSSLEQFCADLTARALKGEIDPVVGRDIEIRTMVDVLLRRRQNNPLLTGDAGVGKTAVVEGLALAIARGDVPPKLAEVRLLNLDVGALLAGASMRGEFEARLKSVIEAAGKAPVPVILFIDEIHTLIGAGGQAGTGDAANLLKPALARGTLRVIGATTWAEYKRHIEKDPALTRRFQVLQVAEPEPGAAVDMVRGLVGTFSRHHGVVVLDEAVRASVMLSHRYLPSRQLPDKAISLLDTACARVALSQHAPPRELQYLRQQLEAARIESALLDAERRVGIGDGASWSEVAQRIAELEVQARDIEQAWQAQVEAVRALLEARAETEGEDERGGEPDGGAGQPCLPADPDTGPAERAVAPAAAHVDTAAFERLHLLDRQLRQLQGGRPLVFPEVSEAMVAAIISDWTGIPVGRMVTDEIAAVRRLSETLSARVVGQTDALRQIAERIQTARAGLADPAKPLGVFLLTGPSGVGKTETALALAEALYGGEQNLITINMSEYQEAHTVSSLKGAPPGYVGYGEGGVLTEAVRRRPYSVVLLDEIEKSHSDVKEMFFQVFDKGYMEDGDGRYIDFRNTTILLTSNVGAELLTSLCADEALAPESDALRMALGPVLLKAFPAAFLGRVTVVPFRPLAQGSLVQIARLYLDRVARRMADHHGVELVYAPAVADYVVARCLVQETGARLMIGFIEQHLLPALSRHWLDALISNRRLARIEIEMASVDPDAAPAEAIAFRLVDDGLPLDVSASAEG


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.9760 - -


  Protein sequence: 934 a.a.    

>T6CP259616 NC_012721:185284-188085 [Burkholderia glumae BGR1] [TssH]
MVISRHALFGKLGTTLFRSLESATTFSKLRGNPYVELVHWLHQLIALADGDLQRIVRHCEIDRARLDRDLQDALAALPSG
AGSLSDFSHHVDAAIERAWVLATLVFGEHRIRGAWLMAALIETPELRRVLLSCSREFGRIPVDGLHEALPAWIAGSPEAD
DTPYDHSDFSPAVPGEASDAMAAPARGSSLEQFCADLTARALKGEIDPVVGRDIEIRTMVDVLLRRRQNNPLLTGDAGVG
KTAVVEGLALAIARGDVPPKLAEVRLLNLDVGALLAGASMRGEFEARLKSVIEAAGKAPVPVILFIDEIHTLIGAGGQAG
TGDAANLLKPALARGTLRVIGATTWAEYKRHIEKDPALTRRFQVLQVAEPEPGAAVDMVRGLVGTFSRHHGVVVLDEAVR
ASVMLSHRYLPSRQLPDKAISLLDTACARVALSQHAPPRELQYLRQQLEAARIESALLDAERRVGIGDGASWSEVAQRIA
ELEVQARDIEQAWQAQVEAVRALLEARAETEGEDERGGEPDGGAGQPCLPADPDTGPAERAVAPAAAHVDTAAFERLHLL
DRQLRQLQGGRPLVFPEVSEAMVAAIISDWTGIPVGRMVTDEIAAVRRLSETLSARVVGQTDALRQIAERIQTARAGLAD
PAKPLGVFLLTGPSGVGKTETALALAEALYGGEQNLITINMSEYQEAHTVSSLKGAPPGYVGYGEGGVLTEAVRRRPYSV
VLLDEIEKSHSDVKEMFFQVFDKGYMEDGDGRYIDFRNTTILLTSNVGAELLTSLCADEALAPESDALRMALGPVLLKAF
PAAFLGRVTVVPFRPLAQGSLVQIARLYLDRVARRMADHHGVELVYAPAVADYVVARCLVQETGARLMIGFIEQHLLPAL
SRHWLDALISNRRLARIEIEMASVDPDAAPAEAIAFRLVDDGLPLDVSASAEG*

  Nucleotide sequence: 2802 bp    

>T6CP259616 NC_012721:185284-188085 [Burkholderia glumae BGR1] [TssH]
ATGGTCATTTCACGTCACGCGCTATTCGGCAAACTCGGCACGACGCTGTTCCGGAGCCTCGAATCTGCCACCACCTTCTC
GAAACTGCGCGGCAATCCCTACGTCGAGCTGGTCCACTGGCTTCATCAATTGATCGCGCTGGCCGACGGTGATCTGCAGC
GCATCGTGCGGCACTGCGAGATCGATCGCGCGCGGCTCGATCGAGACTTGCAGGATGCGTTGGCGGCTCTGCCGTCCGGT
GCCGGCTCGCTGAGTGATTTCTCACATCACGTGGACGCGGCGATCGAGCGCGCGTGGGTACTTGCGACGCTCGTGTTTGG
CGAGCACCGAATTCGTGGCGCGTGGCTGATGGCCGCGTTGATTGAGACGCCCGAATTGCGGCGCGTATTGCTGTCCTGCT
CGAGGGAGTTCGGCCGGATCCCGGTGGACGGCCTGCACGAGGCGCTGCCGGCCTGGATCGCCGGGTCGCCCGAGGCCGAC
GACACGCCCTATGATCACAGCGATTTCTCGCCGGCGGTGCCGGGAGAGGCGTCCGATGCGATGGCGGCGCCGGCCCGCGG
CAGTTCGCTCGAGCAGTTCTGTGCCGATCTGACGGCGCGCGCGCTCAAGGGCGAAATCGATCCGGTGGTGGGCCGGGATA
TCGAGATTCGCACGATGGTGGACGTGCTGCTGCGACGCCGGCAAAACAATCCATTGCTGACTGGCGATGCTGGCGTCGGC
AAGACCGCCGTCGTCGAGGGGCTGGCGCTCGCGATCGCGCGCGGCGACGTGCCACCCAAGCTTGCCGAGGTGCGGCTGCT
GAACCTCGATGTTGGCGCGTTGCTGGCCGGCGCGAGTATGCGCGGCGAGTTCGAGGCGCGCTTGAAATCGGTGATTGAGG
CGGCGGGAAAGGCGCCCGTGCCGGTGATCCTGTTTATCGACGAGATTCATACTTTGATCGGTGCGGGTGGCCAGGCCGGC
ACCGGAGATGCGGCGAACCTGCTGAAGCCCGCGCTCGCGCGCGGCACGCTGCGCGTGATCGGCGCCACCACCTGGGCCGA
ATACAAGCGACATATCGAGAAGGATCCGGCGCTCACGCGTCGCTTCCAGGTGCTGCAGGTGGCCGAGCCGGAACCGGGCG
CCGCCGTCGACATGGTACGCGGGTTGGTTGGCACGTTCTCGCGGCACCATGGCGTTGTCGTGCTCGATGAGGCCGTGCGC
GCGTCCGTGATGCTGTCGCATCGCTATCTGCCGTCGCGTCAGTTGCCGGACAAGGCGATCAGCCTGCTCGACACGGCTTG
CGCGCGTGTTGCCTTGTCGCAGCACGCACCGCCGCGCGAATTACAGTATTTGCGTCAGCAGCTCGAGGCGGCGCGTATCG
AAAGCGCGCTGCTCGATGCCGAGCGGCGCGTCGGCATCGGCGACGGCGCGTCGTGGTCCGAGGTGGCACAGCGCATCGCC
GAACTCGAGGTACAAGCGCGTGATATCGAGCAGGCATGGCAGGCTCAGGTGGAGGCGGTGCGAGCCCTGCTTGAGGCGCG
TGCCGAGACGGAGGGCGAGGACGAGCGCGGCGGCGAACCGGACGGTGGCGCCGGCCAGCCCTGCCTCCCTGCCGATCCGG
ACACCGGGCCCGCCGAGCGCGCTGTCGCGCCGGCGGCTGCTCACGTCGACACGGCGGCTTTCGAACGGTTGCACCTGCTG
GATCGTCAGCTGCGGCAGTTGCAGGGCGGGCGTCCGTTAGTGTTTCCGGAGGTGAGCGAGGCGATGGTGGCCGCGATCAT
CTCCGATTGGACTGGCATCCCGGTCGGTCGCATGGTCACTGATGAAATCGCGGCGGTGCGGCGTCTTTCCGAGACGCTTT
CGGCACGGGTCGTGGGGCAGACGGACGCGTTGCGGCAGATTGCCGAACGCATACAGACTGCTCGCGCGGGCCTGGCCGAT
CCAGCCAAGCCGCTGGGCGTGTTCCTACTGACCGGGCCGTCCGGCGTTGGCAAGACCGAGACGGCGCTCGCGCTCGCGGA
AGCGCTGTATGGAGGGGAACAAAACCTTATTACCATCAACATGAGCGAGTATCAGGAAGCGCACACGGTATCGAGCCTGA
AGGGCGCCCCACCGGGGTACGTCGGCTATGGGGAGGGGGGCGTCTTGACCGAGGCGGTGCGCCGTCGGCCCTATTCGGTC
GTGCTGCTCGACGAGATCGAGAAATCGCATAGCGACGTAAAGGAGATGTTCTTCCAGGTATTCGACAAGGGCTACATGGA
AGACGGCGACGGCCGCTATATCGATTTTCGCAATACCACGATCCTGCTCACCAGCAACGTTGGCGCAGAGCTGCTAACCA
GCTTGTGCGCGGATGAGGCGCTGGCGCCCGAGTCCGACGCGCTGCGCATGGCGCTCGGTCCGGTGTTGCTGAAGGCGTTT
CCGGCCGCGTTCCTGGGACGCGTGACGGTGGTGCCATTCCGTCCGCTCGCCCAGGGTTCGCTCGTGCAGATCGCCCGGTT
GTATCTGGATCGGGTCGCTCGGCGCATGGCGGATCATCATGGCGTCGAGCTCGTTTATGCGCCGGCTGTCGCCGACTACG
TCGTTGCGCGCTGCCTCGTGCAGGAGACAGGCGCACGGCTGATGATCGGCTTTATCGAGCAGCATCTGCTGCCGGCGCTC
TCCCGGCATTGGCTCGACGCGCTCATCTCGAATCGGCGGCTCGCGCGCATCGAAATCGAAATGGCCTCGGTCGATCCCGA
TGCGGCACCCGCCGAAGCGATTGCGTTTCGCCTGGTCGACGATGGTTTGCCGCTCGACGTTTCGGCAAGCGCCGAGGGGT
GA