Detailed information of component protein


Summary

Component ID T6CP259615
Component protein type TssE
T6SS ID (Type) T6SS17508 insolico (Type i3)
Strain Burkholderia glumae BGR1
Replicon chromosome II
Sequence Protein sequence (173 a.a.); Nucleotide sequence (519 bp)
Reference
insolico Bioinformatics investigation has been performed on this T6SS

External database links

Locus tag (Gene) BGLU_RS18725
Coordinate (Strand) 182450..182968 (-)
NCBI ID WP_012733043.1
RefSeq NC_012721
Uniprot ID -
KEGG ID -
PDB ID -

Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
GPW_gp25 PF04965.16 3.7e-20 44..144

Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Outside 1-172 MSLGTTRHRQACMPSLLDRLLDDAPGRPSERPEDYAPDAKGMLAIIRRDLGLLLNTTNFEDEPDVMRHPAVAASVVNYGLPALSGGYLPHRNWEDVERRIRTAIVRFEPRLIPESLRLRPLHDTDPVRYNCLAFEIEALVHWSPYPLELRIQSALDMERNQVTFEQATHAGH



Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.9921 - -



  Protein sequence: 173 a.a.    

>T6CP259615 NC_012721:c182968-182450 [Burkholderia glumae BGR1] [TssE]
MSLGTTRHRQACMPSLLDRLLDDAPGRPSERPEDYAPDAKGMLAIIRRDLGLLLNTTNFEDEPDVMRHPAVAASVVNYGL
PALSGGYLPHRNWEDVERRIRTAIVRFEPRLIPESLRLRPLHDTDPVRYNCLAFEIEALVHWSPYPLELRIQSALDMERN
QVTFEQATHAGH*

  Nucleotide sequence: 519 bp    

>T6CP259615 NC_012721:c182968-182450 [Burkholderia glumae BGR1] [TssE]
ATGAGCCTCGGTACCACCCGCCACCGGCAGGCCTGCATGCCGTCGCTGCTCGATCGCCTGCTCGACGACGCGCCCGGGCG
GCCCAGCGAGCGCCCGGAAGACTACGCGCCCGACGCAAAGGGCATGCTCGCCATCATCCGGCGAGATCTCGGCCTGCTGC
TCAACACCACTAATTTCGAGGACGAGCCCGATGTCATGCGGCATCCGGCGGTAGCGGCCTCGGTCGTCAACTACGGCTTG
CCGGCGCTATCAGGCGGCTATCTGCCGCATCGCAACTGGGAAGACGTCGAGCGACGGATCCGCACCGCGATCGTGCGTTT
CGAACCGCGCCTGATCCCGGAATCGCTGCGGCTGCGCCCGCTCCACGACACGGATCCGGTCCGCTACAACTGCCTGGCGT
TTGAAATCGAGGCGCTCGTGCACTGGTCGCCCTATCCGCTCGAACTGCGCATCCAGAGCGCACTGGATATGGAAAGAAAC
CAGGTCACCTTCGAACAAGCCACGCACGCGGGGCACTGA