Detailed information of component protein


Summary

Component ID T6CP259614
Component protein type TssF
T6SS ID (Type) T6SS17508 insolico (Type i3)
Strain Burkholderia glumae BGR1
Replicon chromosome II
Sequence Protein sequence (627 a.a.); Nucleotide sequence (1881 bp)
Reference
insolico Bioinformatics investigation has been performed on this T6SS
External database links

Locus tag (Gene) BGLU_RS18720
Coordinate (Strand) 180568..182448 (-)
NCBI ID WP_012733042.1
RefSeq NC_012721
Uniprot ID -
KEGG ID -
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
T6SS_TssF PF05947.14 7.8e-229 1..623
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Outside 1-626 MDPRFLDYYSRELTYLHELAGEFAAQHPKIARRLGMEGIEVADPYVERLIEAFCFMSARTQLKLDAEFPRFTQRLLEVVYPNYVAPTPSIAVAQLRPSLREGDFTHGLTVPRHSPLRAAIPVGEQTACEFRSSQDITLWPIEIAEARLTAVPPDIPDTDRHLLPHQQLRGALRLRLRTTGEVKFNQMTRFDRLPIYIGGDERIASHLFELIHAGSVASVVRKLGAARGEGYVVAKTPVAFEGLQTDQGLLPLPWNAFHGHNLLQEYFACRQRFYFFALTQLAPGLARVDDKEAEIVLLLDRLPEELATHVDASRFLLFCTPIVNLFPKRTDRIEINRAHTDFHLIADRTRPLDYEIFSVSRVFGQKAETSQEVEFNPLYQTLHSDIGNHGRYFSVCREQRTLSANARKYGTRMPYTGTEVYVSLVDQAEAPYADDIRYLSVEAWVTNRDLPCLIPRNGRDDLTMSDSVPIEGVRLVHPPSAPRAPYASGETAWRLIRQLSFNYMPLSDLDHGDGGQALRNMLRLFIAPDEREQARQIEALVGARTEPVVRRLPGQDLLVYGRGVRCALTLDETGFSGVSPYLFGLVLEHYLARHVSINVFTETELHSMQRGLVTRWRPRMGGRGAV


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.9953 - -


  Protein sequence: 627 a.a.    

>T6CP259614 NC_012721:c182448-180568 [Burkholderia glumae BGR1] [TssF]
MDPRFLDYYSRELTYLHELAGEFAAQHPKIARRLGMEGIEVADPYVERLIEAFCFMSARTQLKLDAEFPRFTQRLLEVVY
PNYVAPTPSIAVAQLRPSLREGDFTHGLTVPRHSPLRAAIPVGEQTACEFRSSQDITLWPIEIAEARLTAVPPDIPDTDR
HLLPHQQLRGALRLRLRTTGEVKFNQMTRFDRLPIYIGGDERIASHLFELIHAGSVASVVRKLGAARGEGYVVAKTPVAF
EGLQTDQGLLPLPWNAFHGHNLLQEYFACRQRFYFFALTQLAPGLARVDDKEAEIVLLLDRLPEELATHVDASRFLLFCT
PIVNLFPKRTDRIEINRAHTDFHLIADRTRPLDYEIFSVSRVFGQKAETSQEVEFNPLYQTLHSDIGNHGRYFSVCREQR
TLSANARKYGTRMPYTGTEVYVSLVDQAEAPYADDIRYLSVEAWVTNRDLPCLIPRNGRDDLTMSDSVPIEGVRLVHPPS
APRAPYASGETAWRLIRQLSFNYMPLSDLDHGDGGQALRNMLRLFIAPDEREQARQIEALVGARTEPVVRRLPGQDLLVY
GRGVRCALTLDETGFSGVSPYLFGLVLEHYLARHVSINVFTETELHSMQRGLVTRWRPRMGGRGAV*

  Nucleotide sequence: 1881 bp    

>T6CP259614 NC_012721:c182448-180568 [Burkholderia glumae BGR1] [TssF]
ATGGATCCGCGCTTCCTCGACTACTACAGCCGCGAACTCACCTATCTGCACGAGCTGGCGGGCGAGTTCGCCGCGCAGCA
TCCGAAGATCGCGCGCCGTCTCGGCATGGAGGGCATCGAGGTCGCCGATCCCTACGTCGAGCGGCTGATCGAGGCCTTCT
GCTTCATGTCGGCACGCACCCAGTTGAAGCTCGACGCAGAGTTTCCCCGCTTCACGCAGCGCCTGCTCGAAGTCGTCTAC
CCGAACTACGTCGCACCGACACCGTCGATCGCCGTGGCGCAGTTGCGGCCGAGCCTGCGCGAGGGCGATTTCACGCATGG
CCTGACGGTGCCGCGCCACAGCCCGCTGCGCGCAGCGATCCCGGTCGGCGAGCAAACAGCCTGCGAATTCCGCAGCAGCC
AGGACATCACGCTGTGGCCGATCGAAATCGCCGAGGCCCGCCTCACGGCCGTGCCGCCCGACATCCCCGACACCGACCGC
CATCTGCTGCCGCATCAGCAGTTGCGCGGCGCGCTGCGACTGCGGCTGCGCACCACCGGCGAAGTCAAGTTCAATCAAAT
GACGCGGTTCGACCGGTTGCCGATCTATATCGGCGGCGACGAGCGGATCGCCTCGCACCTGTTCGAGTTGATTCATGCCG
GCAGCGTCGCATCGGTGGTCCGCAAGTTAGGCGCGGCGCGCGGCGAGGGGTATGTGGTAGCGAAAACCCCGGTGGCGTTC
GAGGGTCTGCAGACCGATCAGGGCTTGTTGCCATTGCCGTGGAACGCCTTCCACGGCCACAACCTGCTGCAGGAATACTT
CGCCTGCCGCCAGCGTTTCTATTTCTTCGCGCTCACGCAGCTCGCGCCCGGACTCGCGCGCGTGGACGACAAGGAGGCCG
AGATCGTCCTGCTGCTCGACCGGCTGCCGGAGGAACTCGCCACCCACGTGGACGCCTCGCGGTTCCTGCTGTTCTGCACA
CCCATCGTCAACCTGTTCCCCAAGCGCACCGATCGAATCGAGATCAACCGTGCGCACACCGATTTCCATCTGATCGCCGA
TCGCACCCGGCCTCTCGACTATGAGATCTTCTCAGTATCGCGCGTATTCGGCCAAAAGGCCGAGACCTCGCAGGAAGTCG
AGTTCAACCCGCTGTACCAAACGCTGCACAGCGACATCGGCAACCATGGGCGCTATTTTTCGGTGTGCCGCGAGCAGCGC
ACGCTGTCGGCGAATGCGCGCAAATACGGCACCCGCATGCCATACACCGGCACCGAGGTCTACGTGTCACTGGTCGACCA
GGCGGAGGCGCCGTACGCCGACGATATCCGTTACCTGTCGGTCGAGGCCTGGGTCACCAATCGCGACCTGCCGTGCCTCA
TTCCTCGCAACGGCCGCGACGACCTGACGATGTCGGACTCGGTGCCGATCGAAGGCGTGCGCCTCGTGCATCCGCCGAGC
GCGCCGCGCGCCCCGTACGCAAGCGGCGAGACGGCGTGGCGACTGATCCGCCAGCTGAGCTTCAACTATATGCCGCTCTC
CGACCTCGACCACGGCGACGGCGGGCAGGCGCTGCGCAACATGCTGCGCCTCTTCATCGCGCCGGACGAACGCGAGCAGG
CACGTCAGATCGAGGCGCTGGTGGGGGCGCGCACCGAGCCGGTGGTGCGGCGCCTGCCGGGCCAGGATTTGCTGGTCTAC
GGGCGCGGCGTGCGCTGCGCGCTGACGCTCGACGAGACCGGCTTCTCGGGCGTGAGCCCTTATCTCTTCGGGCTCGTGCT
CGAGCATTACCTCGCGCGGCACGTATCGATCAACGTGTTCACCGAGACCGAGCTGCATTCGATGCAACGCGGCCTCGTGA
CGCGCTGGCGACCGCGCATGGGCGGCCGAGGCGCCGTATGA