SecReT6, T6SS database

Detailed information of component protein

Summary

Component ID	T6CP259613
Component protein type	TssG
T6SS ID (Type)	T6SS17508 (Type i3)
Strain	Burkholderia glumae BGR1
Replicon	chromosome II
Sequence	Protein sequence (357 a.a.); Nucleotide sequence (1071 bp)
Reference	[1] Kim N, Kim JJ, Kim I, et al. Type VI secretion systems of plant-pathogenic Burkholderia glumae BGR1 play a functionally distinct role in interspecies interactions and virulence. Mol Plant Pathol. 2020 Aug;21(8):1055-1069. doi: 10.1111/mpp.12966. Epub 2020 Jul 9. PMID: 32643866

Bioinformatics investigation has been performed on this T6SS

External database links

Locus tag (Gene)	BGLU_RS18715
Coordinate (Strand)	179501..180571 (-)
NCBI ID	WP_012733041.1
RefSeq	NC_012721
Uniprot ID	-
KEGG ID	-
PDB ID	-

Pfam domain hit(s)

Domain	Pfam ID	E-value	Aligned region
T6SS_TssG	PF06996.13	6.9e-95	37..336

Transmembrane helices

Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction	Region	Sequence
Outside	1-356	MSRDPAGVAAPNCGNDIEPPRARLDPGKLRAWFDPDAPWRAGFLSLLRTIAAREPGLRPPGTASRPCDEPFRIGQQPTLTFAPREIAALGIHDGRLDIRLFGLGLWGPQGPLPLHMTELAYSRVESHQDHALVHLLDVFHHRALSQFYRAWASAQSIASLDRPDEETFSFYVASLAGTDPDEARRSCLATHARYSAAAHLVREARNPDGIATTLSHYFGVPMQVEEFVAHWIRLSDTEHTHIGKPGHASIIGEGALLGEAIPDRQHKFRLVVGPLDLGQYLRLTPHGADLATFVEWVRAFVGHEYAWEVKLLIKPCEVPPARADTSQRLGYSTWLGEPTHDRPVVGMVFEPEQYTD

Signal peptides

Signal peptides and corresponding cleavage sites are predicted using SignalP 5.0 software.

Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).

Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).

Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).

Prediction	Probability	Cleavage site	Signal peptide sequence
Other	0.9610	-	-

Protein sequence: 357 a.a.

						>T6CP259613 NC_012721:c180571-179501 [Burkholderia glumae BGR1] [TssG]
MSRDPAGVAAPNCGNDIEPPRARLDPGKLRAWFDPDAPWRAGFLSLLRTIAAREPGLRPPGTASRPCDEPFRIGQQPTLT
FAPREIAALGIHDGRLDIRLFGLGLWGPQGPLPLHMTELAYSRVESHQDHALVHLLDVFHHRALSQFYRAWASAQSIASL
DRPDEETFSFYVASLAGTDPDEARRSCLATHARYSAAAHLVREARNPDGIATTLSHYFGVPMQVEEFVAHWIRLSDTEHT
HIGKPGHASIIGEGALLGEAIPDRQHKFRLVVGPLDLGQYLRLTPHGADLATFVEWVRAFVGHEYAWEVKLLIKPCEVPP
ARADTSQRLGYSTWLGEPTHDRPVVGMVFEPEQYTD*					

Nucleotide sequence: 1071 bp

						>T6CP259613 NC_012721:c180571-179501 [Burkholderia glumae BGR1] [TssG]
ATGAGCCGCGACCCCGCCGGCGTCGCGGCGCCGAATTGCGGCAACGACATCGAGCCTCCCCGAGCGCGGCTCGATCCGGG
CAAACTCAGGGCTTGGTTCGACCCCGATGCGCCGTGGCGGGCCGGCTTCCTCAGCCTGTTGCGCACGATCGCCGCTCGTG
AACCCGGGCTGCGCCCGCCCGGCACGGCGAGCCGGCCGTGCGACGAGCCGTTCCGGATCGGCCAGCAGCCAACGCTGACG
TTCGCGCCGCGCGAGATCGCCGCGCTCGGCATCCACGACGGCCGCCTCGACATCAGGCTGTTCGGTCTCGGCCTGTGGGG
GCCGCAGGGGCCGTTGCCGCTGCATATGACGGAGCTCGCGTACAGTCGCGTCGAAAGCCATCAGGATCACGCCCTGGTGC
ATCTGCTCGACGTGTTTCACCACCGCGCCTTGTCGCAGTTCTACCGCGCCTGGGCGTCGGCGCAGAGCATCGCCTCGCTC
GACCGGCCCGACGAGGAAACCTTCTCGTTCTATGTCGCGAGTCTCGCCGGCACCGATCCGGACGAGGCGCGGCGCTCTTG
CCTGGCCACCCATGCGCGCTACAGCGCGGCGGCGCATCTGGTGCGGGAGGCACGCAACCCGGACGGCATCGCCACCACGC
TGTCGCATTACTTCGGCGTGCCGATGCAGGTCGAGGAATTCGTCGCGCACTGGATCCGGCTCTCCGATACCGAGCACACG
CACATCGGCAAGCCCGGGCATGCCTCGATTATCGGCGAGGGCGCGCTGCTGGGCGAAGCGATTCCGGACCGGCAGCACAA
GTTCCGGTTGGTGGTCGGGCCGCTCGATCTCGGCCAATACCTGCGCCTGACGCCGCACGGCGCCGATCTCGCTACCTTCG
TCGAATGGGTACGCGCGTTCGTCGGCCACGAGTACGCGTGGGAGGTCAAGCTGCTGATAAAGCCGTGCGAGGTGCCGCCC
GCGCGCGCCGACACTTCGCAGCGGCTCGGCTATTCAACATGGCTCGGCGAGCCGACGCACGATCGCCCCGTGGTCGGCAT
GGTGTTCGAGCCGGAACAGTACACCGACTGA					