Detailed information of component protein


Summary

Component ID T6CP259611
Component protein type TssI
T6SS ID (Type) T6SS17508 insolico (Type i3)
Strain Burkholderia glumae BGR1
Replicon chromosome II
Sequence Protein sequence (859 a.a.); Nucleotide sequence (2577 bp)
Reference
insolico Bioinformatics investigation has been performed on this T6SS
External database links

Locus tag (Gene) BGLU_RS18690
Coordinate (Strand) 169581..172157 (+)
NCBI ID WP_043308110.1
RefSeq NC_012721
Uniprot ID -
KEGG ID -
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
Phage_GPD PF05954.13 1e-101 40..367
Phage_base_V PF04717.14 5.4e-14 423..490
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Outside 1-858 MATDSKTINPRRRSVSVTSAAIPQVLGHAALEFMAMEGSEELGKLFDYKVLLRTPDDYVIPLAESANLDLRAMLGKELTVSIELDAPAGVQGTAQGAVREITGLIIKSEFVRREGRFNVYRVTLKPWLWLATLTTDYRIFQDKTVIEILDTILGEYPYPVEKRLDVSRYVLMGESERNEPRAYQVQYGESDFRFMQRLMEEWGIYWFIEHSDGKQRLVLCDHVGAHRKSPNPAYQKLAFQPQEGKTDAEYISAFSTAEMICPGSYLTNDFDFTRPRADLHAVNQQARDTDWNTFERYEWPGDYSDSHHGELLARTRMEMLRAPGMRASGKGNLRGLACGQTFELINFDRTDANREYLVIGAELKVIGNPDESGSGYQYRFSNRFKVQPTSEVFRLPMVTRKPFVRGPQSAIVVGPEGETLWTDEFGRVKVHFAWDRYGRNAETDSCWVRVSQAWAGSNFGSIYIPRIGQEVIVDFWNGDPDRPLILGSLYNTLTPPPWDLPGNATQSGVMSRSINGGKQNFNAIRFEDKAGAEEVLIQAEREMNWLTKLNESHVVGVDFSVAVGAAFNVEVGGEVNCNVLGMASYAVGLAHSLLVGGAQTTAVAGASTLTVGEARSVTVGGASLHTVGGMYALTAGGEISISSGKSSLTLCADGTIKLIGRTVQIQGDDRVVLQGSPLDLNPGDPDVGIGLAAPTPLVLAALPLPLLLPLPLPLPLPGPAPEPTPAPEPTPAPEPTPAPEPTPTPEPTPAPEPTPAPEPTPAPEPTPTPTPTPTPTPTPTPTPTPTPTPTPTPTPTPTPTPTPTPTPTPTPTPTPTPTPTPTPTPTPTPTPTPTPTPTPTPPPTPLPTETPQPSGHDT


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.5924 - -


  Protein sequence: 859 a.a.    

>T6CP259611 NC_012721:169581-172157 [Burkholderia glumae BGR1] [TssI]
MATDSKTINPRRRSVSVTSAAIPQVLGHAALEFMAMEGSEELGKLFDYKVLLRTPDDYVIPLAESANLDLRAMLGKELTV
SIELDAPAGVQGTAQGAVREITGLIIKSEFVRREGRFNVYRVTLKPWLWLATLTTDYRIFQDKTVIEILDTILGEYPYPV
EKRLDVSRYVLMGESERNEPRAYQVQYGESDFRFMQRLMEEWGIYWFIEHSDGKQRLVLCDHVGAHRKSPNPAYQKLAFQ
PQEGKTDAEYISAFSTAEMICPGSYLTNDFDFTRPRADLHAVNQQARDTDWNTFERYEWPGDYSDSHHGELLARTRMEML
RAPGMRASGKGNLRGLACGQTFELINFDRTDANREYLVIGAELKVIGNPDESGSGYQYRFSNRFKVQPTSEVFRLPMVTR
KPFVRGPQSAIVVGPEGETLWTDEFGRVKVHFAWDRYGRNAETDSCWVRVSQAWAGSNFGSIYIPRIGQEVIVDFWNGDP
DRPLILGSLYNTLTPPPWDLPGNATQSGVMSRSINGGKQNFNAIRFEDKAGAEEVLIQAEREMNWLTKLNESHVVGVDFS
VAVGAAFNVEVGGEVNCNVLGMASYAVGLAHSLLVGGAQTTAVAGASTLTVGEARSVTVGGASLHTVGGMYALTAGGEIS
ISSGKSSLTLCADGTIKLIGRTVQIQGDDRVVLQGSPLDLNPGDPDVGIGLAAPTPLVLAALPLPLLLPLPLPLPLPGPA
PEPTPAPEPTPAPEPTPAPEPTPTPEPTPAPEPTPAPEPTPAPEPTPTPTPTPTPTPTPTPTPTPTPTPTPTPTPTPTPT
PTPTPTPTPTPTPTPTPTPTPTPTPTPTPTPTPTPTPTPTPPPTPLPTETPQPSGHDT*

  Nucleotide sequence: 2577 bp    

>T6CP259611 NC_012721:169581-172157 [Burkholderia glumae BGR1] [TssI]
ATGGCAACTGATTCGAAGACGATCAACCCTCGACGCCGTTCAGTCAGCGTGACGAGCGCGGCGATACCGCAGGTGCTGGG
GCATGCCGCGCTGGAATTTATGGCGATGGAGGGTAGCGAGGAACTCGGCAAGCTGTTCGATTACAAAGTGCTGCTGCGTA
CTCCGGACGATTACGTGATACCGCTGGCCGAGAGCGCGAATCTCGACTTGCGCGCGATGCTCGGCAAGGAGTTGACCGTG
TCGATCGAACTCGATGCGCCGGCTGGTGTGCAGGGCACGGCACAGGGCGCCGTGCGCGAGATCACCGGGTTGATCATCAA
GTCGGAGTTCGTGCGCCGCGAGGGACGTTTCAACGTCTATCGCGTGACCCTGAAGCCGTGGCTGTGGCTCGCCACGCTGA
CCACCGACTACCGCATCTTCCAGGACAAGACGGTGATCGAGATCCTCGACACGATCCTCGGCGAGTATCCGTATCCGGTC
GAGAAGCGGCTCGACGTGAGCCGTTATGTGCTGATGGGCGAGAGCGAGCGGAATGAGCCGCGAGCCTACCAGGTCCAGTA
CGGCGAGTCCGACTTCCGCTTCATGCAGCGCCTGATGGAGGAGTGGGGCATCTACTGGTTCATCGAGCACTCCGACGGCA
AGCAGCGGCTGGTGTTGTGCGACCACGTCGGCGCGCACCGCAAGTCGCCGAACCCGGCGTATCAAAAGCTGGCGTTCCAG
CCGCAGGAGGGCAAGACCGACGCGGAATATATCAGCGCGTTCTCGACGGCCGAGATGATCTGCCCGGGCAGCTATTTGAC
GAACGACTTCGATTTCACGCGGCCGCGGGCGGATTTGCATGCGGTCAACCAGCAGGCGCGCGATACCGACTGGAATACGT
TCGAGCGCTATGAATGGCCCGGCGACTACAGCGATAGCCATCACGGCGAGTTGCTGGCGCGCACGCGCATGGAAATGCTG
CGTGCGCCAGGCATGCGCGCGAGCGGCAAGGGCAACCTGCGCGGGCTCGCGTGCGGGCAGACCTTCGAGTTGATCAATTT
CGATCGCACGGATGCCAACCGCGAATATCTGGTGATAGGCGCCGAGCTCAAGGTGATCGGCAACCCGGACGAATCGGGCA
GCGGCTATCAGTACAGGTTTTCCAATCGCTTTAAGGTACAGCCGACCAGCGAGGTGTTCCGGCTGCCGATGGTCACGCGC
AAGCCATTCGTGAGGGGGCCGCAGTCGGCCATCGTGGTGGGTCCGGAAGGCGAAACGCTGTGGACCGACGAGTTTGGTCG
CGTGAAGGTGCATTTTGCATGGGACCGCTATGGCCGCAACGCCGAGACCGATTCGTGCTGGGTACGGGTGAGCCAGGCCT
GGGCGGGCTCCAATTTCGGCAGCATTTATATTCCGCGCATCGGTCAGGAAGTGATCGTCGATTTCTGGAATGGCGACCCC
GATCGCCCCCTGATCCTCGGCAGTCTCTACAACACGCTGACGCCGCCGCCATGGGATCTGCCGGGCAACGCGACGCAGAG
CGGCGTGATGAGCCGTTCGATCAATGGCGGCAAGCAGAATTTCAACGCCATTCGATTCGAGGACAAGGCGGGAGCCGAAG
AGGTCCTGATCCAGGCTGAGCGCGAAATGAACTGGCTGACCAAGCTGAACGAGTCGCACGTTGTGGGTGTCGATTTCTCG
GTCGCCGTCGGTGCCGCGTTCAACGTCGAGGTGGGCGGGGAAGTCAATTGCAACGTGCTGGGCATGGCGTCCTACGCCGT
GGGTCTTGCGCACAGCTTGTTGGTGGGTGGGGCGCAGACCACGGCGGTGGCCGGTGCCTCGACGCTGACCGTGGGCGAGG
CGCGATCCGTCACGGTGGGAGGCGCGTCCTTGCATACCGTCGGTGGCATGTACGCGTTGACCGCGGGTGGCGAGATATCG
ATTTCGTCCGGCAAGTCGTCGCTGACGCTGTGCGCGGACGGCACGATCAAGCTGATCGGCAGGACAGTCCAAATTCAGGG
CGACGATCGCGTCGTCTTGCAGGGTTCGCCGCTCGATCTCAACCCGGGTGATCCTGATGTTGGGATCGGTCTGGCAGCAC
CGACTCCGCTCGTTCTTGCGGCCTTGCCGTTGCCATTGCTGTTGCCGCTGCCGCTGCCGTTACCGTTGCCGGGGCCGGCC
CCTGAACCGACGCCGGCCCCTGAACCGACGCCGGCCCCTGAACCGACGCCGGCCCCTGAACCGACGCCGACACCTGAGCC
GACGCCGGCACCTGAGCCGACGCCGGCCCCTGAACCGACGCCGGCACCTGAACCGACACCGACACCGACACCGACACCGA
CACCGACACCGACACCGACACCGACACCGACACCGACACCGACACCGACACCGACACCGACACCGACACCGACACCGACA
CCGACACCGACACCGACACCGACACCGACACCGACACCGACACCGACACCGACACCGACACCGACACCGACACCGACGCC
GACGCCGACGCCGACGCCGACGCCGACGCCGACACCGACACCGCCGCCGACGCCGTTACCGACGGAAACGCCGCAGCCCA
GCGGTCACGACACCTGA