Detailed information of component protein
Summary
| Component ID | T6CP259609 |
| Component protein type | TssM |
| T6SS ID (Type) | T6SS17508  (Type i3) |
| Strain | Burkholderia glumae BGR1 |
| Replicon | chromosome II |
| Sequence | Protein sequence (1366 a.a.); Nucleotide sequence (4098 bp) |
| Reference |
Bioinformatics investigation has been performed on this T6SSExternal database links
| Locus tag (Gene) | |
| Coordinate (Strand) | 163266..167363 (+) |
| NCBI ID | WP_012733033.1 |
| RefSeq | NC_012721 |
| Uniprot ID | - |
| KEGG ID | - |
| PDB ID | - |
Pfam domain hit(s)
| Domain | Pfam ID | E-value | Aligned region |
|---|
Transmembrane helices
- Transmembrane helices are predicted using TMHMM 2.0 software.
| Prediction | Region | Sequence |
|---|---|---|
| Inside | 1-15 | MSHLNRFFKFLISRQ |
| Transmembrane helix | 16-38 | TLVFVAIVAVAAAIWFIGPLIAF |
| Outside | 39-47 | GDYRPLATV |
| Transmembrane helix | 48-70 | LARALSIVTLLAMLLFCLLGWSL |
| Inside | 71-71 | G |
| Transmembrane helix | 72-94 | VIGAALLCLAIWYLGPLFMFGSV |
| Outside | 95-103 | RPLASTGVR |
| Transmembrane helix | 104-123 | VLLIAVLVACYAAYGLYRLW |
| Inside | 124-545 | KAMRSNDALLQRILNPFSTQASDDAPAREQIRAVNSVVTKAIDKVKQLRGGAFGLRRLLESQRYLYALPWYLVMGSPGAGKTTMILNSGLEFPDADQMVAASLGHHAETVNCDWWFGNDAILIDTAGRYLMHDMPARADEPDHAAGAVGSANAAEWRGFLALLRKRRPRAPVNGVLLVVSVEELLTCSPSELKLLAAAMRARLGELKHDLRIRYPAYLVVTKLDLLPGFLEYFQSLTAESRAQILGFTLPYHRDAPEERRDALRLACIEELRELEQGFEDGLNARLQEEYELDRRRRLYALPAEFRSLCAILVEFVASVFVDSKYDDTELNGVLRGVYFSSAAQTHDVVPADRDTLLQRLRRGLAARFGADAAAVSAPAPDGAAPVEYRGYFLRNLFQRVIVAEGHLVRPNLRWEIRFRALR |
| Transmembrane helix | 546-565 | VVGHLLSIAVAAWLVYGMAG |
| Outside | 566-1365 | SFQRNRDYLAAIDHQTNALAARVQAQRRTPKPGDTGALLSASLDLPRFGELDLDRPGIAWRYGLYAAPGVVDASSRTYAALLDQMLLPPVVARIATVLDGEVRAQNADEVYKTLPVYLMLYDPSHYDAKEVKAWVMRDWEQAGSVAMLGDRDVVAGHLDALFRDGVPVTPATPMDGALIKRARELLGRNSASGRLYERAMKAMEPDAPENITLARAGGPQALSVFAMAGDPALAQGVPGLYTYEGYHEVFTRRLPEFLEQAHERDAWLMGRGDRSSTWGRAGRVLRAGERALADEIRRQYLIDYGNYWQRFLDGVRLASGGAAPALDLQMLRTLSAPDSPLVRLARTAARETSLATPDTQDGPSLAGSAAAIASRRSRAASAVLAIGGATSTINRLARRRMEHDLVEQRFAALRAVVTGEADTDGGKLVRAWSASASLSSLPSLPSPGGGGPMQLDGIVSLIGERYTRLVLAGDVLATDSMPPADDLGATMRLEAEKLPAPFRAVLAGLAERSTQEVNRKMGALLGSRLEANVGDPCRSLIEGRYSFADSAQEVSIADFNRVFAAKGLLDKFFRETLADHVDTGSHPWRYRPAAPGMPPMRGPSLEPFERAAAIRRAFFLGPGASRLVWKLGIRVVSLDPDITELRLDIDGQSLRYAHGPVTTFPVTWPGPRGGSMAGITAEPQVSAQSSTLGAEGPWALFRLFDRGRLVPTSDTSRYTEDFDFDGRHAVLELNTGGRAGGEPIGLLKGFRCPGFGGVTGGMTAAATSAPRSAAAAPAGEADDAGEGTRGSEPPTEAAFD |
Signal peptides
- Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
- Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
- Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
| Prediction | Probability | Cleavage site | Signal peptide sequence |
|---|---|---|---|
| Other | 0.9897 | - | - |
Protein sequence: 1366 a.a.
Nucleotide sequence: 4098 bp