Detailed information of component protein


Summary

Component ID T6CP259609
Component protein type TssM
T6SS ID (Type) T6SS17508 insolico (Type i3)
Strain Burkholderia glumae BGR1
Replicon chromosome II
Sequence Protein sequence (1366 a.a.); Nucleotide sequence (4098 bp)
Reference
insolico Bioinformatics investigation has been performed on this T6SS
External database links

Locus tag (Gene) BGLU_RS18680
Coordinate (Strand) 163266..167363 (+)
NCBI ID WP_012733033.1
RefSeq NC_012721
Uniprot ID -
KEGG ID -
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
IcmF-related_N PF14331.8 8.3e-80 274..551
IcmF-related PF06761.14 1.2e-76 618..918
IcmF_C PF06744.14 5.9e-27 1198..1301
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Inside 1-15 MSHLNRFFKFLISRQ
Transmembrane helix 16-38 TLVFVAIVAVAAAIWFIGPLIAF
Outside 39-47 GDYRPLATV
Transmembrane helix 48-70 LARALSIVTLLAMLLFCLLGWSL
Inside 71-71 G
Transmembrane helix 72-94 VIGAALLCLAIWYLGPLFMFGSV
Outside 95-103 RPLASTGVR
Transmembrane helix 104-123 VLLIAVLVACYAAYGLYRLW
Inside 124-545 KAMRSNDALLQRILNPFSTQASDDAPAREQIRAVNSVVTKAIDKVKQLRGGAFGLRRLLESQRYLYALPWYLVMGSPGAGKTTMILNSGLEFPDADQMVAASLGHHAETVNCDWWFGNDAILIDTAGRYLMHDMPARADEPDHAAGAVGSANAAEWRGFLALLRKRRPRAPVNGVLLVVSVEELLTCSPSELKLLAAAMRARLGELKHDLRIRYPAYLVVTKLDLLPGFLEYFQSLTAESRAQILGFTLPYHRDAPEERRDALRLACIEELRELEQGFEDGLNARLQEEYELDRRRRLYALPAEFRSLCAILVEFVASVFVDSKYDDTELNGVLRGVYFSSAAQTHDVVPADRDTLLQRLRRGLAARFGADAAAVSAPAPDGAAPVEYRGYFLRNLFQRVIVAEGHLVRPNLRWEIRFRALR
Transmembrane helix 546-565 VVGHLLSIAVAAWLVYGMAG
Outside 566-1365 SFQRNRDYLAAIDHQTNALAARVQAQRRTPKPGDTGALLSASLDLPRFGELDLDRPGIAWRYGLYAAPGVVDASSRTYAALLDQMLLPPVVARIATVLDGEVRAQNADEVYKTLPVYLMLYDPSHYDAKEVKAWVMRDWEQAGSVAMLGDRDVVAGHLDALFRDGVPVTPATPMDGALIKRARELLGRNSASGRLYERAMKAMEPDAPENITLARAGGPQALSVFAMAGDPALAQGVPGLYTYEGYHEVFTRRLPEFLEQAHERDAWLMGRGDRSSTWGRAGRVLRAGERALADEIRRQYLIDYGNYWQRFLDGVRLASGGAAPALDLQMLRTLSAPDSPLVRLARTAARETSLATPDTQDGPSLAGSAAAIASRRSRAASAVLAIGGATSTINRLARRRMEHDLVEQRFAALRAVVTGEADTDGGKLVRAWSASASLSSLPSLPSPGGGGPMQLDGIVSLIGERYTRLVLAGDVLATDSMPPADDLGATMRLEAEKLPAPFRAVLAGLAERSTQEVNRKMGALLGSRLEANVGDPCRSLIEGRYSFADSAQEVSIADFNRVFAAKGLLDKFFRETLADHVDTGSHPWRYRPAAPGMPPMRGPSLEPFERAAAIRRAFFLGPGASRLVWKLGIRVVSLDPDITELRLDIDGQSLRYAHGPVTTFPVTWPGPRGGSMAGITAEPQVSAQSSTLGAEGPWALFRLFDRGRLVPTSDTSRYTEDFDFDGRHAVLELNTGGRAGGEPIGLLKGFRCPGFGGVTGGMTAAATSAPRSAAAAPAGEADDAGEGTRGSEPPTEAAFD


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.9897 - -


  Protein sequence: 1366 a.a.    

>T6CP259609 NC_012721:163266-167363 [Burkholderia glumae BGR1] [TssM]
MSHLNRFFKFLISRQTLVFVAIVAVAAAIWFIGPLIAFGDYRPLATVLARALSIVTLLAMLLFCLLGWSLGVIGAALLCL
AIWYLGPLFMFGSVRPLASTGVRVLLIAVLVACYAAYGLYRLWKAMRSNDALLQRILNPFSTQASDDAPAREQIRAVNSV
VTKAIDKVKQLRGGAFGLRRLLESQRYLYALPWYLVMGSPGAGKTTMILNSGLEFPDADQMVAASLGHHAETVNCDWWFG
NDAILIDTAGRYLMHDMPARADEPDHAAGAVGSANAAEWRGFLALLRKRRPRAPVNGVLLVVSVEELLTCSPSELKLLAA
AMRARLGELKHDLRIRYPAYLVVTKLDLLPGFLEYFQSLTAESRAQILGFTLPYHRDAPEERRDALRLACIEELRELEQG
FEDGLNARLQEEYELDRRRRLYALPAEFRSLCAILVEFVASVFVDSKYDDTELNGVLRGVYFSSAAQTHDVVPADRDTLL
QRLRRGLAARFGADAAAVSAPAPDGAAPVEYRGYFLRNLFQRVIVAEGHLVRPNLRWEIRFRALRVVGHLLSIAVAAWLV
YGMAGSFQRNRDYLAAIDHQTNALAARVQAQRRTPKPGDTGALLSASLDLPRFGELDLDRPGIAWRYGLYAAPGVVDASS
RTYAALLDQMLLPPVVARIATVLDGEVRAQNADEVYKTLPVYLMLYDPSHYDAKEVKAWVMRDWEQAGSVAMLGDRDVVA
GHLDALFRDGVPVTPATPMDGALIKRARELLGRNSASGRLYERAMKAMEPDAPENITLARAGGPQALSVFAMAGDPALAQ
GVPGLYTYEGYHEVFTRRLPEFLEQAHERDAWLMGRGDRSSTWGRAGRVLRAGERALADEIRRQYLIDYGNYWQRFLDGV
RLASGGAAPALDLQMLRTLSAPDSPLVRLARTAARETSLATPDTQDGPSLAGSAAAIASRRSRAASAVLAIGGATSTINR
LARRRMEHDLVEQRFAALRAVVTGEADTDGGKLVRAWSASASLSSLPSLPSPGGGGPMQLDGIVSLIGERYTRLVLAGDV
LATDSMPPADDLGATMRLEAEKLPAPFRAVLAGLAERSTQEVNRKMGALLGSRLEANVGDPCRSLIEGRYSFADSAQEVS
IADFNRVFAAKGLLDKFFRETLADHVDTGSHPWRYRPAAPGMPPMRGPSLEPFERAAAIRRAFFLGPGASRLVWKLGIRV
VSLDPDITELRLDIDGQSLRYAHGPVTTFPVTWPGPRGGSMAGITAEPQVSAQSSTLGAEGPWALFRLFDRGRLVPTSDT
SRYTEDFDFDGRHAVLELNTGGRAGGEPIGLLKGFRCPGFGGVTGGMTAAATSAPRSAAAAPAGEADDAGEGTRGSEPPT
EAAFD*

  Nucleotide sequence: 4098 bp    

>T6CP259609 NC_012721:163266-167363 [Burkholderia glumae BGR1] [TssM]
ATGTCCCATCTGAACCGCTTCTTCAAATTCCTCATCTCGCGTCAAACGCTCGTGTTCGTGGCGATCGTGGCGGTCGCCGC
GGCCATCTGGTTCATCGGCCCGCTTATCGCGTTCGGCGACTATCGTCCTCTCGCGACGGTGCTGGCGCGCGCGCTGTCGA
TCGTCACGCTGCTAGCGATGTTGCTGTTCTGTTTGCTCGGTTGGTCGCTCGGCGTGATCGGGGCCGCGCTGCTTTGCCTC
GCGATCTGGTATCTCGGGCCGCTGTTCATGTTCGGCTCCGTGCGGCCGCTGGCGTCGACGGGCGTGCGCGTGCTGCTGAT
CGCGGTGCTGGTGGCCTGTTACGCGGCCTACGGCCTGTACCGGCTCTGGAAGGCAATGCGCAGCAACGACGCGCTGCTGC
AGCGCATCCTGAACCCGTTCTCCACCCAGGCTAGTGACGACGCGCCGGCGCGCGAGCAAATCCGCGCTGTCAACTCGGTG
GTGACGAAGGCCATCGACAAGGTCAAGCAACTGCGCGGTGGGGCGTTCGGCCTGCGCCGGCTGCTCGAAAGCCAGCGCTA
TCTGTACGCGTTGCCATGGTATCTGGTGATGGGTTCGCCGGGCGCGGGCAAGACCACGATGATCCTGAATTCCGGCCTCG
AGTTTCCCGATGCCGATCAGATGGTGGCGGCCTCGCTCGGCCACCACGCCGAAACGGTGAATTGCGATTGGTGGTTTGGC
AACGACGCGATCCTGATCGACACGGCGGGCCGTTACCTGATGCATGACATGCCGGCACGAGCCGATGAGCCCGACCACGC
CGCCGGCGCGGTGGGATCGGCGAATGCCGCCGAATGGCGCGGCTTCCTCGCTCTGCTGCGCAAGCGCCGGCCCCGCGCGC
CGGTCAATGGCGTGCTGCTGGTGGTCTCGGTCGAGGAACTGCTGACGTGCTCGCCGTCCGAGCTCAAGCTGCTCGCCGCG
GCGATGCGCGCGCGGCTCGGCGAGCTGAAGCACGATCTGCGGATTCGCTACCCTGCCTATCTGGTGGTCACGAAGCTCGA
CCTGCTGCCGGGCTTTCTCGAGTATTTCCAGTCGTTGACGGCGGAGAGTCGCGCGCAGATTCTCGGGTTTACGCTGCCCT
ATCATCGCGACGCGCCCGAGGAGCGGCGCGACGCGTTGCGTCTGGCCTGTATCGAGGAGCTGCGTGAACTGGAACAAGGT
TTCGAAGACGGCCTCAACGCGCGGCTGCAGGAGGAATACGAGCTCGATCGGCGTCGAAGGCTTTATGCGTTGCCGGCGGA
ATTTCGCAGCCTATGCGCGATACTGGTCGAATTCGTCGCGTCCGTGTTCGTCGATTCGAAATACGACGATACCGAGCTGA
ACGGCGTGCTGCGCGGCGTATATTTCAGTAGTGCGGCGCAGACTCACGACGTGGTGCCTGCCGATCGCGACACGCTGCTG
CAACGTCTGCGGCGAGGGCTGGCGGCCCGCTTCGGCGCGGATGCCGCAGCGGTCTCCGCACCGGCGCCGGACGGCGCCGC
GCCCGTCGAGTATCGCGGCTATTTCTTGCGCAACCTGTTCCAACGCGTGATCGTTGCCGAAGGGCATCTGGTGCGCCCGA
ATCTGCGCTGGGAAATCCGCTTTCGCGCGTTGCGGGTGGTCGGCCATCTGCTGTCAATCGCGGTAGCGGCTTGGCTCGTG
TATGGGATGGCCGGCAGTTTCCAGCGCAATCGCGACTATCTCGCTGCGATCGACCACCAGACGAATGCGCTCGCCGCGCG
CGTGCAGGCACAGCGCCGGACGCCGAAGCCGGGTGACACGGGCGCACTGCTGTCGGCGTCGCTCGATTTGCCTCGGTTCG
GTGAGCTCGACCTTGATCGCCCCGGCATCGCGTGGCGCTACGGGCTGTACGCGGCCCCCGGCGTGGTCGATGCTTCGAGC
CGAACCTATGCGGCGCTGCTCGACCAGATGCTGCTGCCGCCCGTCGTTGCCCGTATTGCGACGGTGCTCGACGGCGAGGT
GCGCGCGCAGAACGCCGACGAGGTCTACAAAACCCTGCCGGTCTATCTCATGCTCTACGATCCTTCGCACTACGATGCGA
AGGAGGTCAAGGCCTGGGTGATGCGAGACTGGGAGCAGGCGGGCAGCGTCGCGATGCTGGGCGATCGCGATGTGGTGGCG
GGCCATCTCGACGCGCTGTTTCGCGACGGTGTGCCCGTGACGCCCGCCACGCCGATGGACGGCGCGCTGATCAAGCGTGC
GCGCGAGCTGCTAGGCCGCAATTCGGCCTCGGGGCGGCTCTACGAGCGCGCAATGAAGGCGATGGAGCCCGATGCACCCG
AGAACATCACGCTGGCCCGCGCGGGCGGCCCGCAGGCGCTGTCGGTGTTCGCGATGGCCGGCGACCCGGCCCTCGCGCAG
GGAGTGCCGGGGCTCTATACCTACGAGGGCTATCACGAGGTTTTTACGCGGCGCCTGCCCGAATTTCTCGAGCAGGCGCA
TGAACGGGACGCATGGCTCATGGGGCGGGGCGATCGATCGTCGACATGGGGGCGTGCGGGCCGTGTACTGCGTGCCGGCG
AGCGGGCGCTCGCCGACGAGATCCGCCGTCAGTACCTGATCGATTACGGGAATTACTGGCAGCGCTTTCTCGACGGCGTG
CGGCTCGCTTCCGGCGGCGCTGCACCGGCGCTCGACCTGCAGATGCTGCGGACGCTTTCCGCGCCCGATTCGCCGCTCGT
CAGACTGGCACGCACGGCCGCTCGCGAGACCTCGCTCGCGACGCCCGATACGCAGGACGGCCCATCGCTGGCCGGCAGCG
CCGCGGCCATCGCGTCGCGGCGCTCGCGCGCCGCCTCGGCCGTGCTCGCGATCGGCGGCGCCACCTCGACGATCAATCGG
CTGGCGCGACGCAGGATGGAGCACGATCTGGTCGAGCAGCGCTTCGCCGCCTTGCGTGCCGTCGTCACGGGCGAGGCCGA
CACCGATGGCGGCAAGTTGGTGCGGGCTTGGTCGGCATCGGCCTCGTTGTCGTCGCTGCCGTCGCTACCTTCGCCGGGAG
GCGGCGGGCCGATGCAGCTCGACGGCATCGTCAGCTTGATCGGCGAGCGCTATACACGCCTCGTGCTGGCCGGTGACGTG
CTCGCCACTGATTCCATGCCACCCGCCGACGATCTGGGTGCCACGATGCGGCTCGAGGCCGAAAAGTTGCCGGCACCGTT
TCGCGCTGTACTGGCTGGTTTGGCCGAGCGCTCCACCCAGGAGGTCAATCGCAAGATGGGCGCGCTGCTCGGTTCGCGGC
TGGAGGCCAACGTGGGCGATCCGTGTCGCAGCCTGATCGAAGGCCGGTATTCGTTCGCGGACAGCGCGCAGGAGGTCAGC
ATCGCCGATTTCAACCGCGTGTTCGCCGCGAAGGGCCTGCTCGACAAGTTCTTTCGCGAGACCCTTGCCGACCACGTCGA
TACGGGTAGCCACCCATGGCGCTATCGGCCGGCCGCTCCCGGGATGCCACCGATGCGCGGGCCGAGCCTCGAGCCGTTCG
AGCGCGCCGCCGCGATCCGCAGGGCGTTCTTCCTCGGTCCGGGCGCGAGCCGGCTGGTCTGGAAACTTGGCATCCGGGTG
GTGTCGCTCGATCCCGATATTACTGAACTGCGTCTCGATATCGACGGGCAGAGCCTGCGTTACGCGCATGGCCCGGTCAC
CACCTTCCCGGTCACCTGGCCGGGACCGCGCGGTGGCTCGATGGCTGGCATCACGGCAGAGCCGCAGGTTAGCGCGCAGA
GTTCGACGCTTGGCGCGGAGGGGCCGTGGGCGCTCTTCCGCCTGTTCGATCGCGGCCGTCTGGTGCCGACATCGGACACG
TCGCGCTACACCGAGGATTTCGATTTCGACGGCCGGCACGCGGTGCTCGAACTGAACACTGGCGGCCGGGCCGGAGGGGA
GCCGATTGGATTGTTGAAGGGGTTTCGCTGCCCGGGCTTCGGTGGCGTGACCGGCGGGATGACAGCGGCCGCCACCTCGG
CTCCGCGGTCCGCTGCGGCGGCACCGGCGGGCGAAGCGGATGACGCTGGAGAGGGCACACGCGGCTCGGAGCCGCCCACC
GAGGCGGCGTTCGATTAA