Detailed information of component protein


Summary

Component ID T6CP259608
Component protein type TssL
T6SS ID (Type) T6SS17508 insolico (Type i3)
Strain Burkholderia glumae BGR1
Replicon chromosome II
Sequence Protein sequence (439 a.a.); Nucleotide sequence (1317 bp)
Reference
insolico Bioinformatics investigation has been performed on this T6SS
External database links

Locus tag (Gene) BGLU_RS18675
Coordinate (Strand) 161937..163253 (+)
NCBI ID WP_012733032.1
RefSeq NC_012721
Uniprot ID -
KEGG ID -
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
DotU PF09850.11 5.2e-62 63..266
OmpA PF00691.22 1e-16 332..430
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Outside 1-438 MSTHAHDEAFSFLAEPGQGETVSGAGASGGAFGPPPAAMDSVAFEPPEDAATRLARVQAARNPLLEAARSLLRMLGDMPASLESSAAVESLRALLVREVAAFQKVCDKANLPWKHVAAVRYALCTGLDEAANRTQWGGGGIWAARSLLIRFEGEVDGGEKFFLLIGRMATDPQEYVDVLEVMYRILGLGFEGRYSVAEDGSRHLEEIRQRLLTLVSGARDTMRLEFSPHWRGEAYDQLKLLRSVPVWATASVAALVVFGRFGWYTYHLLTVRNPLEARILAIGRSPAPAAHAAPAHLPLRLSVLLKDEIARGELTVDEDARHSKVVFRGDTMFVTGKSRVRPELEPVLAKVAREVARVGGRVIVTGYTDSQPIHTREFPDNLVLSQKRAAFVADVLKAHGTPSERIVSIGKGDAQPVADNATPQGRSRNRRVEVLVVQ


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.7973 - -


  Protein sequence: 439 a.a.    

>T6CP259608 NC_012721:161937-163253 [Burkholderia glumae BGR1] [TssL]
MSTHAHDEAFSFLAEPGQGETVSGAGASGGAFGPPPAAMDSVAFEPPEDAATRLARVQAARNPLLEAARSLLRMLGDMPA
SLESSAAVESLRALLVREVAAFQKVCDKANLPWKHVAAVRYALCTGLDEAANRTQWGGGGIWAARSLLIRFEGEVDGGEK
FFLLIGRMATDPQEYVDVLEVMYRILGLGFEGRYSVAEDGSRHLEEIRQRLLTLVSGARDTMRLEFSPHWRGEAYDQLKL
LRSVPVWATASVAALVVFGRFGWYTYHLLTVRNPLEARILAIGRSPAPAAHAAPAHLPLRLSVLLKDEIARGELTVDEDA
RHSKVVFRGDTMFVTGKSRVRPELEPVLAKVAREVARVGGRVIVTGYTDSQPIHTREFPDNLVLSQKRAAFVADVLKAHG
TPSERIVSIGKGDAQPVADNATPQGRSRNRRVEVLVVQ*

  Nucleotide sequence: 1317 bp    

>T6CP259608 NC_012721:161937-163253 [Burkholderia glumae BGR1] [TssL]
ATGAGCACGCATGCTCATGACGAGGCCTTCAGTTTCCTCGCGGAGCCGGGGCAGGGCGAGACCGTGTCCGGCGCGGGCGC
GTCGGGGGGCGCTTTCGGGCCGCCCCCTGCGGCCATGGACAGCGTCGCGTTCGAGCCACCCGAGGACGCGGCCACGCGCC
TCGCGCGCGTACAAGCTGCGCGCAATCCCTTGCTCGAGGCGGCGCGCTCGTTGCTGCGCATGCTCGGCGACATGCCGGCC
TCGCTCGAATCGTCGGCGGCCGTCGAAAGCCTGCGCGCGCTGCTGGTGCGCGAGGTCGCCGCGTTTCAGAAGGTCTGCGA
CAAGGCGAATTTGCCATGGAAGCACGTCGCTGCGGTGCGCTACGCACTGTGCACCGGACTCGACGAGGCGGCCAATCGCA
CCCAGTGGGGCGGCGGCGGCATCTGGGCCGCGCGCAGCCTGTTGATCCGTTTCGAGGGCGAGGTCGACGGCGGCGAGAAA
TTCTTCCTGCTGATCGGTCGGATGGCGACAGACCCGCAGGAGTACGTCGACGTGCTCGAGGTGATGTACCGGATTCTCGG
CCTCGGCTTCGAGGGGCGCTATAGCGTCGCCGAGGATGGCAGCCGCCATCTCGAGGAGATACGCCAGCGGCTGCTCACCC
TCGTGAGCGGCGCGCGCGACACGATGCGCTTGGAATTCTCGCCACATTGGCGCGGCGAGGCGTATGACCAGTTGAAATTG
TTGCGCAGCGTCCCCGTGTGGGCCACGGCGAGCGTCGCTGCGCTCGTCGTGTTTGGTCGCTTCGGCTGGTACACCTATCA
CTTGTTAACGGTCCGCAATCCGCTGGAGGCGCGGATCCTCGCGATCGGCCGCTCGCCCGCGCCGGCCGCACATGCAGCGC
CGGCGCATCTGCCGCTACGGCTGTCGGTGCTGCTCAAGGATGAAATCGCGCGTGGCGAGTTGACGGTCGACGAGGACGCG
CGGCACAGCAAGGTGGTGTTCCGGGGCGACACCATGTTCGTCACCGGCAAGAGCCGCGTCCGACCCGAGCTGGAGCCGGT
TCTGGCAAAGGTGGCGCGCGAGGTCGCCCGGGTGGGCGGGCGTGTGATCGTGACCGGCTATACCGACAGCCAGCCGATCC
ATACCCGCGAGTTTCCCGACAATCTGGTCCTGTCCCAGAAGCGTGCGGCGTTCGTCGCCGACGTGCTGAAGGCGCATGGC
ACGCCCTCCGAGCGGATTGTGTCGATCGGCAAGGGCGACGCGCAGCCGGTGGCCGACAATGCCACGCCGCAGGGGCGCTC
GCGCAACCGGCGCGTGGAAGTCCTCGTGGTGCAATGA