Detailed information of component protein


Summary

Component ID T6CP259607
Component protein type TssK
T6SS ID (Type) T6SS17508 insolico (Type i3)
Strain Burkholderia glumae BGR1
Replicon chromosome II
Sequence Protein sequence (450 a.a.); Nucleotide sequence (1350 bp)
Reference
insolico Bioinformatics investigation has been performed on this T6SS
External database links

Locus tag (Gene) BGLU_RS18670
Coordinate (Strand) 160591..161940 (+)
NCBI ID WP_012733031.1
RefSeq NC_012721
Uniprot ID -
KEGG ID -
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
T6SS_VasE PF05936.14 1.5e-136 20..446
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Outside 1-449 MSWYNKVVWSEGLFLRPQLFQQQERYFEYLAHRRSVALSPFFWGFGQYEIDQESLSFGKLVFKGGSGVFPDGTPFDVPSHTPPPPPLTIEPAHQDQLIYLAVPLRLPNTEEVTFAEQSGSLARYVAYDTELRDSNAIGQGPKLVQLANLRLRLLPEKELTQSWIGIALTRVKALHADGAASLHVTDHIPPVSGYGANPLLREWTMQLHGLAKLRADALAARLSGTDGRPGAAAEVADYLLLQVLNRYEPLLEHICQIEEIPPVVLYRELAMLAGELSTFVRPQTRRPLTAPGYDHAQLYRSIKPLVDEVHHLLNQVLIRSAQPIPISEQPHGIRTVAVLPNELAGYSSLVLAVSAQLSPDVLQQQFLAQTKISHPQRLPELVRSHLPGLTMVPLPVPPRQIPFNSNFIYFELSRTGPFWDQIARQGGLAMHIAGHFPELKLELWGVRQK


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.9947 - -


  Protein sequence: 450 a.a.    

>T6CP259607 NC_012721:160591-161940 [Burkholderia glumae BGR1] [TssK]
MSWYNKVVWSEGLFLRPQLFQQQERYFEYLAHRRSVALSPFFWGFGQYEIDQESLSFGKLVFKGGSGVFPDGTPFDVPSH
TPPPPPLTIEPAHQDQLIYLAVPLRLPNTEEVTFAEQSGSLARYVAYDTELRDSNAIGQGPKLVQLANLRLRLLPEKELT
QSWIGIALTRVKALHADGAASLHVTDHIPPVSGYGANPLLREWTMQLHGLAKLRADALAARLSGTDGRPGAAAEVADYLL
LQVLNRYEPLLEHICQIEEIPPVVLYRELAMLAGELSTFVRPQTRRPLTAPGYDHAQLYRSIKPLVDEVHHLLNQVLIRS
AQPIPISEQPHGIRTVAVLPNELAGYSSLVLAVSAQLSPDVLQQQFLAQTKISHPQRLPELVRSHLPGLTMVPLPVPPRQ
IPFNSNFIYFELSRTGPFWDQIARQGGLAMHIAGHFPELKLELWGVRQK*

  Nucleotide sequence: 1350 bp    

>T6CP259607 NC_012721:160591-161940 [Burkholderia glumae BGR1] [TssK]
ATGAGTTGGTATAACAAGGTGGTCTGGAGCGAAGGATTGTTCTTGCGTCCGCAGTTGTTCCAACAGCAAGAACGATATTT
CGAATATCTCGCGCATCGCAGAAGCGTTGCGCTGAGTCCGTTTTTCTGGGGTTTCGGCCAGTACGAGATCGACCAGGAGT
CCTTGTCGTTCGGCAAGCTCGTGTTCAAGGGCGGCAGCGGCGTGTTTCCGGATGGCACGCCGTTCGACGTGCCGAGCCAC
ACGCCGCCGCCGCCGCCGCTCACGATCGAGCCCGCGCATCAGGACCAACTGATCTACCTGGCCGTGCCGCTGCGCTTGCC
GAACACCGAGGAAGTGACGTTCGCCGAGCAGAGCGGCTCGCTCGCACGCTACGTTGCCTACGACACCGAACTGCGCGACA
GCAACGCCATCGGTCAGGGGCCGAAGCTCGTCCAGCTCGCGAACCTGCGGCTGCGGCTGCTGCCCGAGAAGGAACTCACG
CAGTCGTGGATCGGCATCGCACTCACGCGCGTGAAGGCACTGCACGCTGACGGCGCGGCGTCGCTACACGTGACCGATCA
CATTCCGCCCGTTTCCGGCTACGGCGCCAATCCGTTGCTGCGCGAATGGACGATGCAACTGCATGGCCTCGCCAAGCTGC
GCGCCGACGCGCTGGCCGCGCGCCTGTCCGGCACTGACGGCCGGCCCGGCGCGGCCGCCGAGGTGGCCGACTATTTGCTG
CTGCAGGTGCTGAATCGTTACGAGCCGCTGCTCGAGCACATCTGTCAAATCGAGGAAATCCCACCGGTGGTGTTATACCG
CGAGCTGGCGATGCTGGCGGGCGAGCTGTCGACCTTCGTGCGACCGCAGACGCGGCGTCCGCTCACGGCGCCGGGCTATG
ACCACGCGCAGTTGTATCGCAGCATCAAGCCGCTGGTCGACGAGGTGCACCATCTGCTCAACCAGGTGTTGATCCGCAGC
GCTCAACCGATCCCGATCAGCGAGCAGCCGCACGGCATTCGTACCGTCGCCGTGCTGCCGAACGAACTGGCCGGCTATTC
CAGTCTGGTGCTCGCAGTCAGCGCCCAGCTATCACCGGATGTGCTGCAGCAGCAGTTCCTCGCGCAGACCAAGATCAGCC
ATCCGCAACGCCTGCCCGAACTGGTCCGCTCGCATCTGCCGGGATTGACGATGGTGCCGCTGCCGGTGCCGCCACGGCAG
ATTCCCTTCAATTCGAATTTCATTTATTTCGAGCTGTCCCGTACCGGGCCGTTCTGGGATCAGATCGCTCGGCAAGGTGG
TCTCGCGATGCATATCGCCGGGCATTTCCCTGAGCTCAAGCTTGAACTATGGGGCGTGCGCCAGAAATGA