Detailed information of component protein


Summary

Component ID T6CP259604
Component protein type TssC
T6SS ID (Type) T6SS17508 insolico (Type i3)
Strain Burkholderia glumae BGR1
Replicon chromosome II
Sequence Protein sequence (501 a.a.); Nucleotide sequence (1503 bp)
Reference
insolico Bioinformatics investigation has been performed on this T6SS
External database links

Locus tag (Gene) BGLU_RS18655
Coordinate (Strand) 157775..159277 (+)
NCBI ID WP_012733028.1
RefSeq NC_012721
Uniprot ID -
KEGG ID -
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
VipB PF05943.14 3.6e-135 69..372
VipB_2 PF18945.2 3e-45 382..493
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Outside 1-500 MVERQSKAHVGAAPSVVSQSDFNALLSREFKPKTERAREAVQSAVQTLAQQALLTSTVLADDAYKNIEAIIGEIDRKLSEQINLVLHHDDFQKLESAWRGLHYLVTNTETDERLKIRFMDVSKDDLRRVMKRYKGVAWDQSPFFKQIYEEEYGQLGGEPYGCLIADYYFDHTPPDVDLLASIAKVAAAAHAPFIAGAAPSVLQMDTWQELANPRDLTKIFTQNLEYAPWNSLRNSEDSRYIGLAMPRFLSRLPYGIKTNPVDEFDFEEATDGADHRKYVWSNAAYAMAVNINRSFKHYGWCTLIRGVESGGVVENLPCHTFPTDDGGVDMKCPTEIAISDRREAELAKNGFIPLIHRKNTDYAAFIGAQSLQKPVEYYDPDATANANLSARLPYLFACSRFAHYLKCIVRDKIGSFKERDEMQQWLNEWVMNYVDADPANSSQETKARRPLAAAEVVVEDVEGNPGYYQAKFFLRPHFQLEGLTVSLRLVAKLPLVKQAA


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.8974 - -


  Protein sequence: 501 a.a.    

>T6CP259604 NC_012721:157775-159277 [Burkholderia glumae BGR1] [TssC]
MVERQSKAHVGAAPSVVSQSDFNALLSREFKPKTERAREAVQSAVQTLAQQALLTSTVLADDAYKNIEAIIGEIDRKLSE
QINLVLHHDDFQKLESAWRGLHYLVTNTETDERLKIRFMDVSKDDLRRVMKRYKGVAWDQSPFFKQIYEEEYGQLGGEPY
GCLIADYYFDHTPPDVDLLASIAKVAAAAHAPFIAGAAPSVLQMDTWQELANPRDLTKIFTQNLEYAPWNSLRNSEDSRY
IGLAMPRFLSRLPYGIKTNPVDEFDFEEATDGADHRKYVWSNAAYAMAVNINRSFKHYGWCTLIRGVESGGVVENLPCHT
FPTDDGGVDMKCPTEIAISDRREAELAKNGFIPLIHRKNTDYAAFIGAQSLQKPVEYYDPDATANANLSARLPYLFACSR
FAHYLKCIVRDKIGSFKERDEMQQWLNEWVMNYVDADPANSSQETKARRPLAAAEVVVEDVEGNPGYYQAKFFLRPHFQL
EGLTVSLRLVAKLPLVKQAA*

  Nucleotide sequence: 1503 bp    

>T6CP259604 NC_012721:157775-159277 [Burkholderia glumae BGR1] [TssC]
ATGGTCGAACGTCAATCGAAGGCTCACGTGGGGGCGGCGCCGAGCGTCGTCAGCCAGTCCGATTTTAACGCGCTGCTGTC
GCGCGAATTCAAGCCGAAAACCGAGCGGGCCCGAGAGGCCGTGCAGAGCGCCGTGCAGACGCTCGCGCAACAGGCGCTGC
TCACCTCGACAGTGCTCGCCGACGATGCTTACAAGAACATCGAGGCGATCATCGGCGAGATCGATCGAAAACTCTCCGAG
CAGATCAATCTGGTGCTGCATCACGACGATTTCCAGAAGCTCGAGAGTGCGTGGCGTGGCCTGCATTATCTGGTCACCAA
CACCGAGACCGACGAGCGACTCAAGATCCGCTTCATGGACGTCTCGAAGGACGACCTGCGGCGCGTGATGAAGCGCTACA
AGGGCGTGGCCTGGGATCAGAGCCCGTTCTTCAAGCAAATCTACGAGGAGGAGTACGGCCAGCTCGGCGGTGAGCCATAC
GGCTGCCTGATCGCCGATTACTACTTCGACCACACGCCGCCCGATGTCGATTTGCTGGCCTCGATCGCCAAGGTTGCCGC
TGCCGCGCACGCGCCGTTTATCGCCGGTGCCGCACCGTCGGTGCTCCAGATGGACACCTGGCAGGAACTCGCGAATCCGC
GCGACCTGACCAAGATATTTACCCAGAACCTCGAATACGCGCCGTGGAATTCGCTGCGCAACTCGGAGGACTCGCGCTAC
ATCGGGCTCGCGATGCCGCGCTTCTTGTCGCGCTTGCCATACGGCATCAAAACGAATCCGGTCGACGAGTTCGACTTCGA
GGAAGCGACCGACGGTGCCGATCATCGCAAGTACGTATGGTCGAACGCGGCCTATGCGATGGCAGTGAACATCAATCGCT
CGTTCAAGCACTACGGCTGGTGCACCCTGATTCGCGGCGTGGAGAGTGGCGGGGTAGTGGAGAATCTGCCCTGCCACACG
TTCCCGACCGACGATGGTGGGGTCGACATGAAGTGCCCGACCGAAATCGCGATTTCCGATCGCCGCGAGGCGGAGCTGGC
GAAAAACGGCTTCATACCGCTGATTCATCGCAAGAACACCGATTACGCGGCATTCATCGGCGCGCAGTCGCTGCAGAAGC
CGGTCGAATACTACGACCCGGACGCCACCGCGAACGCCAATCTCTCGGCGCGCCTGCCTTATTTGTTCGCGTGCTCGCGC
TTCGCACATTACCTGAAATGCATCGTGCGCGACAAGATCGGCTCGTTCAAGGAGCGCGACGAGATGCAGCAATGGCTCAA
TGAGTGGGTGATGAACTACGTCGACGCGGATCCGGCGAATTCATCGCAGGAGACCAAGGCCCGGCGGCCTCTCGCGGCCG
CCGAGGTGGTAGTCGAGGATGTCGAGGGCAATCCCGGCTACTACCAGGCGAAGTTTTTCCTGCGCCCGCATTTCCAGCTC
GAGGGCCTGACGGTGTCGCTGCGTCTCGTCGCCAAGCTGCCGCTAGTGAAGCAAGCGGCCTGA