Detailed information of component protein
Summary
| Component ID | T6CP259603 |
| Component protein type | TssB |
| T6SS ID (Type) | T6SS17508  (Type i3) |
| Strain | Burkholderia glumae BGR1 |
| Replicon | chromosome II |
| Sequence | Protein sequence (178 a.a.); Nucleotide sequence (534 bp) |
| Reference |
Bioinformatics investigation has been performed on this T6SSExternal database links
| Locus tag (Gene) | BGLU_RS18650 |
| Coordinate (Strand) | 157164..157697 (+) |
| NCBI ID | WP_012733027.1 |
| RefSeq | NC_012721 |
| Uniprot ID | - |
| KEGG ID | - |
| PDB ID | - |
Pfam domain hit(s)
| Domain | Pfam ID | E-value | Aligned region |
|---|---|---|---|
| T6SS_VipA | PF05591.14 | 7.9e-59 | 12..162 |
Transmembrane helices
- Transmembrane helices are predicted using TMHMM 2.0 software.
| Prediction | Region | Sequence |
|---|---|---|
| Outside | 1-177 | MSVSNNSQKFIARNRAPRVQIEYDVEIYGSEKKVELPFVMGVLADLSGKPIEALPAVAERKFFNIDIDNFDERMKAMKPRVAFSVPNTLTNQGELMVDMTFESMDDFSPAAVARKVDALAQLLDARTQLANLQTYMDGKAGAESLVSKVLRDPALLEALAKAPKPRSASSDDATAGE |
Signal peptides
- Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
- Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
- Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
| Prediction | Probability | Cleavage site | Signal peptide sequence |
|---|---|---|---|
| Other | 0.9960 | - | - |
Protein sequence: 178 a.a.
>T6CP259603 NC_012721:157164-157697 [Burkholderia glumae BGR1] [TssB]
MSVSNNSQKFIARNRAPRVQIEYDVEIYGSEKKVELPFVMGVLADLSGKPIEALPAVAERKFFNIDIDNFDERMKAMKPR
VAFSVPNTLTNQGELMVDMTFESMDDFSPAAVARKVDALAQLLDARTQLANLQTYMDGKAGAESLVSKVLRDPALLEALA
KAPKPRSASSDDATAGE*
MSVSNNSQKFIARNRAPRVQIEYDVEIYGSEKKVELPFVMGVLADLSGKPIEALPAVAERKFFNIDIDNFDERMKAMKPR
VAFSVPNTLTNQGELMVDMTFESMDDFSPAAVARKVDALAQLLDARTQLANLQTYMDGKAGAESLVSKVLRDPALLEALA
KAPKPRSASSDDATAGE*
Nucleotide sequence: 534 bp
>T6CP259603 NC_012721:157164-157697 [Burkholderia glumae BGR1] [TssB]
ATGTCCGTTTCCAACAATTCTCAGAAATTCATTGCGCGTAATCGCGCGCCGCGCGTGCAGATCGAATACGACGTGGAAAT
CTACGGCTCGGAAAAGAAGGTCGAGTTGCCGTTCGTGATGGGCGTGCTGGCCGATCTGTCAGGCAAACCGATCGAGGCGT
TGCCGGCCGTAGCCGAACGCAAGTTCTTCAATATCGACATCGACAATTTCGACGAACGCATGAAGGCGATGAAGCCGCGC
GTCGCGTTCTCGGTGCCGAACACGCTGACGAATCAGGGAGAGTTGATGGTCGACATGACCTTCGAGAGCATGGACGATTT
CTCGCCCGCTGCCGTGGCGAGGAAGGTCGACGCGCTCGCGCAACTGCTCGACGCACGCACACAGCTCGCCAACCTGCAAA
CCTACATGGACGGCAAGGCCGGGGCCGAAAGTCTCGTCAGCAAAGTATTGCGTGATCCCGCCTTGCTCGAAGCACTCGCC
AAGGCGCCCAAGCCGCGGTCCGCATCCTCCGACGACGCAACGGCCGGTGAGTGA
ATGTCCGTTTCCAACAATTCTCAGAAATTCATTGCGCGTAATCGCGCGCCGCGCGTGCAGATCGAATACGACGTGGAAAT
CTACGGCTCGGAAAAGAAGGTCGAGTTGCCGTTCGTGATGGGCGTGCTGGCCGATCTGTCAGGCAAACCGATCGAGGCGT
TGCCGGCCGTAGCCGAACGCAAGTTCTTCAATATCGACATCGACAATTTCGACGAACGCATGAAGGCGATGAAGCCGCGC
GTCGCGTTCTCGGTGCCGAACACGCTGACGAATCAGGGAGAGTTGATGGTCGACATGACCTTCGAGAGCATGGACGATTT
CTCGCCCGCTGCCGTGGCGAGGAAGGTCGACGCGCTCGCGCAACTGCTCGACGCACGCACACAGCTCGCCAACCTGCAAA
CCTACATGGACGGCAAGGCCGGGGCCGAAAGTCTCGTCAGCAAAGTATTGCGTGATCCCGCCTTGCTCGAAGCACTCGCC
AAGGCGCCCAAGCCGCGGTCCGCATCCTCCGACGACGCAACGGCCGGTGAGTGA