Detailed information of component protein
Summary
| Component ID | T6CP259601 |
| Component protein type | TssB |
| T6SS ID (Type) | T6SS17507  (Type i4a) |
| Strain | Cupriavidus pinatubonensis JMP134 |
| Replicon | chromosome I |
| Sequence | Protein sequence (183 a.a.); Nucleotide sequence (549 bp) |
| Reference |
Experimental investigation has been performed on this T6SSExternal database links
| Locus tag (Gene) | REUT_RS08725 |
| Coordinate (Strand) | 1872929..1873477 (-) |
| NCBI ID | WP_011297896.1 |
| RefSeq | NC_007347 |
| Uniprot ID | Q470T5_CUPPJ |
| KEGG ID | reu:Reut_A1733 |
| PDB ID | - |
Pfam domain hit(s)
| Domain | Pfam ID | E-value | Aligned region |
|---|---|---|---|
| T6SS_VipA | PF05591.14 | 3.8e-56 | 11..162 |
Transmembrane helices
- Transmembrane helices are predicted using TMHMM 2.0 software.
| Prediction | Region | Sequence |
|---|---|---|
| Outside | 1-182 | MSNSLQKWVGRNRPPRVQISYDVEVGDAIEKRELPMVVGLLADLSGHPAEPLPKLKERRFVEIDRDNFDEIMGKIAPRLELSVPDTMKDGQSNLKVELNFEKFSDFHPESLVGQIPRLAKLLEARQQLRDLLGKLDGNDELDSLLERIVRDADELKKVRSEADAGQPAAADEQAAETPADAS |
Signal peptides
- Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
- Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
- Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
| Prediction | Probability | Cleavage site | Signal peptide sequence |
|---|---|---|---|
| Other | 0.9964 | - | - |
Protein sequence: 183 a.a.
>T6CP259601 NC_007347:c1873477-1872929 [Cupriavidus pinatubonensis JMP134] [TssB]
MSNSLQKWVGRNRPPRVQISYDVEVGDAIEKRELPMVVGLLADLSGHPAEPLPKLKERRFVEIDRDNFDEIMGKIAPRLE
LSVPDTMKDGQSNLKVELNFEKFSDFHPESLVGQIPRLAKLLEARQQLRDLLGKLDGNDELDSLLERIVRDADELKKVRS
EADAGQPAAADEQAAETPADAS*
MSNSLQKWVGRNRPPRVQISYDVEVGDAIEKRELPMVVGLLADLSGHPAEPLPKLKERRFVEIDRDNFDEIMGKIAPRLE
LSVPDTMKDGQSNLKVELNFEKFSDFHPESLVGQIPRLAKLLEARQQLRDLLGKLDGNDELDSLLERIVRDADELKKVRS
EADAGQPAAADEQAAETPADAS*
Nucleotide sequence: 549 bp
>T6CP259601 NC_007347:c1873477-1872929 [Cupriavidus pinatubonensis JMP134] [TssB]
ATGTCCAATAGCCTGCAGAAGTGGGTCGGGCGCAATCGCCCGCCCCGTGTCCAGATCTCGTACGACGTCGAAGTGGGTGA
CGCCATCGAGAAGCGTGAATTGCCCATGGTGGTCGGCCTTCTGGCGGACCTGTCGGGCCATCCCGCCGAGCCGCTGCCCA
AGCTGAAGGAGCGCCGCTTCGTCGAGATCGACCGCGACAACTTCGACGAGATCATGGGCAAGATCGCGCCGCGCCTGGAG
CTGTCGGTTCCCGACACCATGAAGGACGGCCAGTCCAACCTGAAGGTCGAACTGAACTTCGAGAAATTCAGCGACTTCCA
TCCGGAAAGCCTGGTGGGTCAGATTCCGCGCCTGGCCAAGCTGCTCGAGGCGCGCCAGCAACTGCGCGACCTGCTGGGCA
AGCTCGACGGCAACGACGAGCTCGACTCGCTGCTCGAGCGCATCGTGCGCGATGCCGATGAGCTGAAGAAGGTGCGCAGC
GAAGCCGACGCCGGCCAGCCGGCCGCAGCGGACGAGCAAGCCGCAGAAACGCCGGCCGACGCCAGCTAA
ATGTCCAATAGCCTGCAGAAGTGGGTCGGGCGCAATCGCCCGCCCCGTGTCCAGATCTCGTACGACGTCGAAGTGGGTGA
CGCCATCGAGAAGCGTGAATTGCCCATGGTGGTCGGCCTTCTGGCGGACCTGTCGGGCCATCCCGCCGAGCCGCTGCCCA
AGCTGAAGGAGCGCCGCTTCGTCGAGATCGACCGCGACAACTTCGACGAGATCATGGGCAAGATCGCGCCGCGCCTGGAG
CTGTCGGTTCCCGACACCATGAAGGACGGCCAGTCCAACCTGAAGGTCGAACTGAACTTCGAGAAATTCAGCGACTTCCA
TCCGGAAAGCCTGGTGGGTCAGATTCCGCGCCTGGCCAAGCTGCTCGAGGCGCGCCAGCAACTGCGCGACCTGCTGGGCA
AGCTCGACGGCAACGACGAGCTCGACTCGCTGCTCGAGCGCATCGTGCGCGATGCCGATGAGCTGAAGAAGGTGCGCAGC
GAAGCCGACGCCGGCCAGCCGGCCGCAGCGGACGAGCAAGCCGCAGAAACGCCGGCCGACGCCAGCTAA