Detailed information of component protein


Summary

Component ID T6CP259600
Component protein type TssC
T6SS ID (Type) T6SS17507 experimental (Type i4a)
Strain Cupriavidus pinatubonensis JMP134
Replicon chromosome I
Sequence Protein sequence (501 a.a.); Nucleotide sequence (1503 bp)
Reference
experimental Experimental investigation has been performed on this T6SS
External database links

Locus tag (Gene) REUT_RS08720
Coordinate (Strand) 1871383..1872885 (-)
NCBI ID WP_011297895.1
RefSeq NC_007347
Uniprot ID Q470T6_CUPPJ
KEGG ID reu:Reut_A1732
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
VipB PF05943.14 6.4e-127 75..374
VipB_2 PF18945.2 1.4e-45 385..495
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Outside 1-500 MASNPIAEAATESKAAAAAATELTLLERIVQEGNMAVEPSQSVYAKKLIGQLASQILDEGMRTSPDKSLVATINERVAEIDQLISDQLNAIMHDADFQALEASWTGLHDMVYGTETGQNLKLRLLNVSKRDLLKDLESAVDHDMSVLFKKVYEEEYGTFGGYPYTVLIGDYSFGRHPQDLALLERVSKVAAAAHAPFIASAAPSLFDLKTFTDLGVARDLSKIFESAELAAWRSFRESEDSRYVSLVLPSYAARLPYGAKTNPVENFNFEEDVDGTDHGKYLWANSAYQLGLRITGAFSRYGWATAIRGVEGGGKVDGMVAHAYKTDEGDVVLKCPTEVTITDRREKELNDLGFIAIVNAKGSNSATFFGSQTANKPKIYNKDSANANAQLSARLPYVLAASRFAHYLKVIMRDKVGSFQNRTDVENFLNNWIADYVLINPSASQEAKARFPLSEARVDVTEVPGKPGAYRATCFLKPHFQMEELTASMRLVAELPAAAA


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.9327 - -


  Protein sequence: 501 a.a.    

>T6CP259600 NC_007347:c1872885-1871383 [Cupriavidus pinatubonensis JMP134] [TssC]
MASNPIAEAATESKAAAAAATELTLLERIVQEGNMAVEPSQSVYAKKLIGQLASQILDEGMRTSPDKSLVATINERVAEI
DQLISDQLNAIMHDADFQALEASWTGLHDMVYGTETGQNLKLRLLNVSKRDLLKDLESAVDHDMSVLFKKVYEEEYGTFG
GYPYTVLIGDYSFGRHPQDLALLERVSKVAAAAHAPFIASAAPSLFDLKTFTDLGVARDLSKIFESAELAAWRSFRESED
SRYVSLVLPSYAARLPYGAKTNPVENFNFEEDVDGTDHGKYLWANSAYQLGLRITGAFSRYGWATAIRGVEGGGKVDGMV
AHAYKTDEGDVVLKCPTEVTITDRREKELNDLGFIAIVNAKGSNSATFFGSQTANKPKIYNKDSANANAQLSARLPYVLA
ASRFAHYLKVIMRDKVGSFQNRTDVENFLNNWIADYVLINPSASQEAKARFPLSEARVDVTEVPGKPGAYRATCFLKPHF
QMEELTASMRLVAELPAAAA*

  Nucleotide sequence: 1503 bp    

>T6CP259600 NC_007347:c1872885-1871383 [Cupriavidus pinatubonensis JMP134] [TssC]
ATGGCAAGCAATCCTATCGCCGAAGCGGCGACCGAATCGAAGGCGGCCGCCGCCGCCGCAACCGAACTGACCCTGCTCGA
GCGCATCGTGCAGGAAGGCAACATGGCCGTGGAGCCGTCGCAGAGCGTCTACGCGAAGAAGCTGATCGGCCAGCTGGCCT
CGCAGATTCTCGACGAAGGCATGCGCACCAGCCCCGACAAGAGCCTGGTGGCAACCATCAACGAGCGCGTGGCCGAGATC
GACCAGTTGATCTCCGACCAGCTCAACGCGATCATGCACGACGCGGACTTCCAGGCGCTGGAAGCGTCGTGGACCGGCCT
GCATGACATGGTGTACGGCACCGAGACCGGCCAGAACCTGAAGCTGCGCCTGCTCAACGTCAGCAAGCGTGACCTGCTGA
AGGACCTGGAGTCGGCGGTCGACCACGACATGAGCGTGCTGTTCAAGAAGGTCTACGAAGAGGAGTACGGCACCTTCGGC
GGCTATCCCTACACCGTGCTGATCGGCGACTACAGCTTTGGCCGCCATCCGCAGGACCTGGCGCTGCTGGAGCGCGTGTC
GAAGGTGGCCGCAGCCGCCCACGCGCCGTTCATTGCCTCGGCCGCGCCGAGCCTGTTCGACCTCAAGACGTTCACCGACC
TGGGTGTGGCGCGCGACCTTTCGAAGATCTTCGAGAGCGCCGAGCTGGCAGCCTGGCGCTCCTTCCGCGAGTCGGAGGAT
TCGCGCTATGTGTCACTGGTGCTGCCGTCCTACGCGGCACGCCTGCCGTACGGCGCCAAGACTAACCCCGTCGAGAACTT
CAACTTCGAGGAAGATGTCGACGGCACCGATCACGGCAAGTACCTGTGGGCCAACTCGGCCTACCAGCTCGGTCTGCGCA
TCACCGGCGCCTTCTCGCGCTACGGCTGGGCTACCGCGATCCGCGGCGTGGAAGGCGGCGGCAAGGTGGACGGCATGGTT
GCCCACGCCTACAAGACTGACGAAGGCGACGTGGTGCTCAAGTGCCCGACCGAGGTGACCATCACCGACCGTCGCGAGAA
GGAGCTGAACGACCTCGGCTTCATCGCCATCGTCAACGCCAAGGGCTCCAACAGCGCCACCTTCTTCGGCAGCCAGACCG
CCAACAAGCCCAAGATCTACAACAAGGACTCGGCCAACGCCAACGCGCAGCTGTCGGCTCGCCTGCCTTACGTGCTGGCG
GCATCGCGCTTCGCGCATTACCTGAAGGTGATCATGCGCGACAAGGTGGGTAGCTTCCAGAACCGCACCGACGTGGAGAA
CTTCCTCAACAACTGGATCGCGGATTACGTGCTGATCAACCCGTCGGCATCGCAGGAAGCCAAGGCGCGGTTCCCGCTCA
GCGAGGCACGCGTGGATGTGACGGAAGTGCCGGGCAAGCCGGGCGCCTATCGTGCGACCTGCTTCCTGAAGCCGCACTTC
CAGATGGAAGAGCTGACCGCATCGATGCGCCTGGTGGCCGAATTGCCGGCCGCAGCCGCCTGA