Detailed information of component protein


Summary

Component ID T6CP259599
Component protein type TssD
T6SS ID (Type) T6SS17507 experimental (Type i4a)
Strain Cupriavidus pinatubonensis JMP134
Replicon chromosome I
Sequence Protein sequence (161 a.a.); Nucleotide sequence (483 bp)
Reference
experimental Experimental investigation has been performed on this T6SS

External database links

Locus tag (Gene) REUT_RS08715
Coordinate (Strand) 1870799..1871281 (-)
NCBI ID WP_011297894.1
RefSeq NC_007347
Uniprot ID Q470T7_CUPPJ
KEGG ID reu:Reut_A1731
PDB ID -

Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
T6SS_HCP PF05638.14 2e-27 6..134

Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Outside 1-160 MDTIILEITDIKGNTKITGHEDKIQIMSFSNGVSMHMNRDVSNSERTMGRPDFQNITLSKMTDQATPGLYGACAGGKDLGVVKLLMGRNEGDTFMPLMTYTLKNTMVSNISTGGGGSEAMDTFCLDFTEIKVEYTKQGSDSKKQGTAAFGWDLATNKAVS



Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.9892 - -



  Protein sequence: 161 a.a.    

>T6CP259599 NC_007347:c1871281-1870799 [Cupriavidus pinatubonensis JMP134] [TssD]
MDTIILEITDIKGNTKITGHEDKIQIMSFSNGVSMHMNRDVSNSERTMGRPDFQNITLSKMTDQATPGLYGACAGGKDLG
VVKLLMGRNEGDTFMPLMTYTLKNTMVSNISTGGGGSEAMDTFCLDFTEIKVEYTKQGSDSKKQGTAAFGWDLATNKAVS
*

  Nucleotide sequence: 483 bp    

>T6CP259599 NC_007347:c1871281-1870799 [Cupriavidus pinatubonensis JMP134] [TssD]
ATGGACACCATCATCCTCGAGATCACTGATATCAAGGGCAACACCAAGATCACCGGCCATGAAGACAAGATCCAGATCAT
GTCTTTCAGCAATGGTGTATCGATGCACATGAACCGGGATGTCTCGAATTCCGAGCGCACCATGGGTCGCCCGGACTTCC
AGAACATCACCCTCAGCAAGATGACCGACCAGGCCACCCCGGGCCTGTACGGCGCCTGCGCCGGCGGCAAGGACCTTGGC
GTGGTCAAGCTGCTGATGGGTCGCAACGAGGGCGACACGTTCATGCCGCTGATGACCTACACGCTGAAGAACACCATGGT
CAGCAACATCAGCACCGGCGGTGGCGGCAGCGAAGCGATGGACACGTTCTGTCTGGATTTCACCGAGATCAAGGTCGAAT
ACACCAAGCAGGGTTCGGACTCGAAGAAGCAGGGCACGGCCGCTTTCGGCTGGGACCTGGCTACCAACAAGGCCGTTTCC
TGA