SecReT6, T6SS database

Detailed information of component protein

Summary

Component ID	T6CP259599
Component protein type	TssD
T6SS ID (Type)	T6SS17507 (Type i4a)
Strain	Cupriavidus pinatubonensis JMP134
Replicon	chromosome I
Sequence	Protein sequence (161 a.a.); Nucleotide sequence (483 bp)
Reference	[1] Li C, Zhu L, Wang D, et al. T6SS secretes an LPS-binding effector to recruit OMVs for exploitative competition and horizontal gene transfer. ISME J. 2022 Feb;16(2):500-510. doi: 10.1038/s41396-021-01093-8. Epub 2021 Aug 25. PMID: 34433898

Experimental investigation has been performed on this T6SS

External database links

Locus tag (Gene)	REUT_RS08715
Coordinate (Strand)	1870799..1871281 (-)
NCBI ID	WP_011297894.1
RefSeq	NC_007347
Uniprot ID	Q470T7_CUPPJ
KEGG ID	reu:Reut_A1731
PDB ID	-

Pfam domain hit(s)

Domain	Pfam ID	E-value	Aligned region
T6SS_HCP	PF05638.14	2e-27	6..134

Transmembrane helices

Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction	Region	Sequence
Outside	1-160	MDTIILEITDIKGNTKITGHEDKIQIMSFSNGVSMHMNRDVSNSERTMGRPDFQNITLSKMTDQATPGLYGACAGGKDLGVVKLLMGRNEGDTFMPLMTYTLKNTMVSNISTGGGGSEAMDTFCLDFTEIKVEYTKQGSDSKKQGTAAFGWDLATNKAVS

Signal peptides

Signal peptides and corresponding cleavage sites are predicted using SignalP 5.0 software.

Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).

Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).

Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).

Prediction	Probability	Cleavage site	Signal peptide sequence
Other	0.9892	-	-

Protein sequence: 161 a.a.

						>T6CP259599 NC_007347:c1871281-1870799 [Cupriavidus pinatubonensis JMP134] [TssD]
MDTIILEITDIKGNTKITGHEDKIQIMSFSNGVSMHMNRDVSNSERTMGRPDFQNITLSKMTDQATPGLYGACAGGKDLG
VVKLLMGRNEGDTFMPLMTYTLKNTMVSNISTGGGGSEAMDTFCLDFTEIKVEYTKQGSDSKKQGTAAFGWDLATNKAVS
*					

Nucleotide sequence: 483 bp

						>T6CP259599 NC_007347:c1871281-1870799 [Cupriavidus pinatubonensis JMP134] [TssD]
ATGGACACCATCATCCTCGAGATCACTGATATCAAGGGCAACACCAAGATCACCGGCCATGAAGACAAGATCCAGATCAT
GTCTTTCAGCAATGGTGTATCGATGCACATGAACCGGGATGTCTCGAATTCCGAGCGCACCATGGGTCGCCCGGACTTCC
AGAACATCACCCTCAGCAAGATGACCGACCAGGCCACCCCGGGCCTGTACGGCGCCTGCGCCGGCGGCAAGGACCTTGGC
GTGGTCAAGCTGCTGATGGGTCGCAACGAGGGCGACACGTTCATGCCGCTGATGACCTACACGCTGAAGAACACCATGGT
CAGCAACATCAGCACCGGCGGTGGCGGCAGCGAAGCGATGGACACGTTCTGTCTGGATTTCACCGAGATCAAGGTCGAAT
ACACCAAGCAGGGTTCGGACTCGAAGAAGCAGGGCACGGCCGCTTTCGGCTGGGACCTGGCTACCAACAAGGCCGTTTCC
TGA					