Detailed information of component protein
Summary
| Component ID | T6CP259598 |
| Component protein type | TssE |
| T6SS ID (Type) | T6SS17507  (Type i4a) |
| Strain | Cupriavidus pinatubonensis JMP134 |
| Replicon | chromosome I |
| Sequence | Protein sequence (155 a.a.); Nucleotide sequence (465 bp) |
| Reference |
Experimental investigation has been performed on this T6SSExternal database links
| Locus tag (Gene) | REUT_RS08710 |
| Coordinate (Strand) | 1870293..1870757 (-) |
| NCBI ID | WP_011297893.1 |
| RefSeq | NC_007347 |
| Uniprot ID | Q470T8_CUPPJ |
| KEGG ID | reu:Reut_A1730 |
| PDB ID | - |
Pfam domain hit(s)
| Domain | Pfam ID | E-value | Aligned region |
|---|---|---|---|
| GPW_gp25 | PF04965.16 | 1.7e-14 | 32..113 |
Transmembrane helices
- Transmembrane helices are predicted using TMHMM 2.0 software.
| Prediction | Region | Sequence |
|---|---|---|
| Outside | 1-154 | MATIISGAPVPLFERLASGGTEPSAHLLDGAQLRQSVARELGRLLNTRSRLCAEAFLASEGTVLDYGVPDCSSRSLQSGPDRALIAALVRHAVTLFEPRLRNVNVQFSTSLNTALAQPVLLIDGELCLGQAPERVSFELAAGDETAQLRGADHG |
Signal peptides
- Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
- Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
- Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
| Prediction | Probability | Cleavage site | Signal peptide sequence |
|---|---|---|---|
| Other | 0.9762 | - | - |
Protein sequence: 155 a.a.
>T6CP259598 NC_007347:c1870757-1870293 [Cupriavidus pinatubonensis JMP134] [TssE]
MATIISGAPVPLFERLASGGTEPSAHLLDGAQLRQSVARELGRLLNTRSRLCAEAFLASEGTVLDYGVPDCSSRSLQSGP
DRALIAALVRHAVTLFEPRLRNVNVQFSTSLNTALAQPVLLIDGELCLGQAPERVSFELAAGDETAQLRGADHG*
MATIISGAPVPLFERLASGGTEPSAHLLDGAQLRQSVARELGRLLNTRSRLCAEAFLASEGTVLDYGVPDCSSRSLQSGP
DRALIAALVRHAVTLFEPRLRNVNVQFSTSLNTALAQPVLLIDGELCLGQAPERVSFELAAGDETAQLRGADHG*
Nucleotide sequence: 465 bp
>T6CP259598 NC_007347:c1870757-1870293 [Cupriavidus pinatubonensis JMP134] [TssE]
ATGGCGACGATCATCAGCGGCGCACCCGTGCCCCTGTTCGAACGGCTGGCGTCCGGCGGCACCGAGCCGTCGGCGCACCT
GCTCGACGGGGCGCAGTTGCGCCAATCGGTGGCGCGCGAACTGGGACGCCTGCTCAATACGCGCTCGCGCCTGTGCGCCG
AGGCTTTCCTCGCCAGCGAGGGCACGGTGCTTGATTACGGCGTGCCCGACTGCTCTTCGCGTTCCCTGCAGTCCGGCCCG
GACCGCGCGCTGATTGCCGCGCTGGTGCGGCATGCCGTGACTTTGTTCGAGCCGCGGCTGCGCAACGTGAACGTGCAATT
CAGTACCTCTTTGAACACCGCATTGGCGCAGCCGGTCCTGCTGATCGACGGTGAGCTTTGTCTTGGCCAGGCGCCCGAGC
GGGTTTCGTTCGAACTGGCCGCAGGCGACGAGACGGCCCAACTGCGCGGGGCCGATCATGGCTGA
ATGGCGACGATCATCAGCGGCGCACCCGTGCCCCTGTTCGAACGGCTGGCGTCCGGCGGCACCGAGCCGTCGGCGCACCT
GCTCGACGGGGCGCAGTTGCGCCAATCGGTGGCGCGCGAACTGGGACGCCTGCTCAATACGCGCTCGCGCCTGTGCGCCG
AGGCTTTCCTCGCCAGCGAGGGCACGGTGCTTGATTACGGCGTGCCCGACTGCTCTTCGCGTTCCCTGCAGTCCGGCCCG
GACCGCGCGCTGATTGCCGCGCTGGTGCGGCATGCCGTGACTTTGTTCGAGCCGCGGCTGCGCAACGTGAACGTGCAATT
CAGTACCTCTTTGAACACCGCATTGGCGCAGCCGGTCCTGCTGATCGACGGTGAGCTTTGTCTTGGCCAGGCGCCCGAGC
GGGTTTCGTTCGAACTGGCCGCAGGCGACGAGACGGCCCAACTGCGCGGGGCCGATCATGGCTGA