Detailed information of component protein


Summary

Component ID T6CP259597
Component protein type TssF
T6SS ID (Type) T6SS17507 experimental (Type i4a)
Strain Cupriavidus pinatubonensis JMP134
Replicon chromosome I
Sequence Protein sequence (584 a.a.); Nucleotide sequence (1752 bp)
Reference
experimental Experimental investigation has been performed on this T6SS
External database links

Locus tag (Gene) REUT_RS08705
Coordinate (Strand) 1868540..1870291 (-)
NCBI ID WP_086004442.1
RefSeq NC_007347
Uniprot ID UPI000A312A65
KEGG ID -
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
T6SS_TssF PF05947.14 3.2e-188 5..579
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Outside 1-583 MGEGDILHYYKRELSYLRTQGAAFAERYPMVASRLALHGTESLDPHTERLIEATAFLAARVHRDLDQSFPQVASSLLENVCPALVQPLPSMTVVQFALDPSQGKVTAGYRVPRHTGLQARTEDDQTCRFRTSWETTLWPLTVEQAQFDQDHTLRLTLACADGVDFSELELTTLRLHLHGDWMVTMPLYELLVSGVAGVRIEPSDGEASLLPASAWREVGYDADEAVLPQPPNAQPAYGLMQEYFAFPRKFHFFDLALPAGRLGRGTRCDIVLRLARVSRGMARIGAGNFRLGCVPAINLFSQTSEPIVLDQRHYEYRLVADQRREAATEIHSVSSVVLSDPASDRTQAVPPVAAASGDAGADGVYWWTRREPTLRPGLSGTDTYLTFVDAGKTSSQPAAPVAYANVLCTNRRLAEQVPVGARMLVENVSQNARVRLLYEPTVQRNPPLGGESLWRLVSLLTLHHGTLASGATGRHEVQQMLRLFAADGSRELEQIRGIRSVQSRGVTAHIGGDAWRGFCRGTEIAIEFDADAFAGGSPLLMGAVLARFFALYTSVNSFVRLVVRRGDEIWKQWEPMTGCQTLL


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.9864 - -


  Protein sequence: 584 a.a.    

>T6CP259597 NC_007347:c1870291-1868540 [Cupriavidus pinatubonensis JMP134] [TssF]
MGEGDILHYYKRELSYLRTQGAAFAERYPMVASRLALHGTESLDPHTERLIEATAFLAARVHRDLDQSFPQVASSLLENV
CPALVQPLPSMTVVQFALDPSQGKVTAGYRVPRHTGLQARTEDDQTCRFRTSWETTLWPLTVEQAQFDQDHTLRLTLACA
DGVDFSELELTTLRLHLHGDWMVTMPLYELLVSGVAGVRIEPSDGEASLLPASAWREVGYDADEAVLPQPPNAQPAYGLM
QEYFAFPRKFHFFDLALPAGRLGRGTRCDIVLRLARVSRGMARIGAGNFRLGCVPAINLFSQTSEPIVLDQRHYEYRLVA
DQRREAATEIHSVSSVVLSDPASDRTQAVPPVAAASGDAGADGVYWWTRREPTLRPGLSGTDTYLTFVDAGKTSSQPAAP
VAYANVLCTNRRLAEQVPVGARMLVENVSQNARVRLLYEPTVQRNPPLGGESLWRLVSLLTLHHGTLASGATGRHEVQQM
LRLFAADGSRELEQIRGIRSVQSRGVTAHIGGDAWRGFCRGTEIAIEFDADAFAGGSPLLMGAVLARFFALYTSVNSFVR
LVVRRGDEIWKQWEPMTGCQTLL*

  Nucleotide sequence: 1752 bp    

>T6CP259597 NC_007347:c1870291-1868540 [Cupriavidus pinatubonensis JMP134] [TssF]
CTGGGCGAAGGCGACATCCTGCACTACTACAAGCGGGAGCTGTCCTATCTGCGTACGCAGGGCGCGGCTTTCGCCGAACG
CTATCCCATGGTGGCGTCGCGCCTGGCGCTGCACGGCACCGAATCGCTTGACCCGCATACCGAACGCCTGATCGAGGCGA
CGGCCTTCCTGGCCGCACGTGTGCACCGCGATCTCGACCAGTCCTTTCCGCAGGTCGCTTCGTCGCTGCTGGAGAATGTC
TGCCCGGCGCTGGTGCAACCGCTGCCCTCGATGACCGTGGTGCAGTTCGCGCTCGACCCGAGCCAGGGCAAGGTCACCGC
AGGCTACCGGGTACCTCGCCATACCGGACTGCAGGCCCGTACCGAGGACGATCAGACCTGCCGCTTCCGCACCAGCTGGG
AAACGACGCTGTGGCCGCTGACGGTCGAGCAGGCCCAGTTCGACCAGGACCATACCCTGCGCCTGACGCTTGCCTGTGCC
GACGGTGTCGACTTCTCGGAGCTGGAACTCACCACGCTGCGCCTGCACCTGCACGGCGACTGGATGGTGACGATGCCGCT
TTACGAACTGCTGGTGAGCGGGGTGGCCGGCGTGCGCATCGAGCCGAGCGACGGCGAGGCCTCGCTGCTGCCGGCTTCGG
CCTGGCGCGAGGTCGGCTACGATGCCGACGAGGCCGTGCTGCCGCAGCCGCCCAATGCGCAACCGGCTTATGGGTTGATG
CAGGAGTACTTCGCCTTTCCGCGCAAGTTCCACTTCTTCGATCTGGCGTTGCCCGCGGGCCGGCTTGGGCGCGGCACGCG
CTGCGATATCGTGCTGCGTCTGGCGCGAGTGTCGCGCGGCATGGCGCGCATTGGCGCCGGCAATTTCCGCCTGGGCTGCG
TGCCGGCCATCAACTTGTTCTCGCAGACCAGTGAGCCGATCGTGCTCGACCAGCGTCACTACGAGTACCGGCTGGTGGCG
GACCAGCGGCGCGAGGCCGCCACCGAGATCCATTCGGTCAGCTCGGTGGTGCTGTCCGATCCGGCCAGCGATCGAACCCA
GGCTGTGCCACCAGTTGCCGCGGCCAGCGGCGACGCGGGTGCCGACGGCGTGTACTGGTGGACCCGCCGCGAGCCGACCC
TTCGGCCCGGCCTGTCCGGCACCGACACCTACCTGACCTTTGTCGATGCGGGCAAGACAAGCAGCCAGCCGGCAGCGCCA
GTCGCCTATGCCAACGTGCTTTGCACCAACCGGCGCCTGGCCGAGCAGGTCCCGGTGGGCGCGCGCATGCTGGTGGAAAA
CGTTTCGCAGAACGCGCGCGTGCGTTTGCTGTACGAGCCGACGGTTCAGCGCAATCCGCCGCTGGGCGGCGAATCGCTGT
GGCGGCTTGTGTCGTTGCTGACGCTGCATCACGGCACGCTGGCAAGCGGTGCCACCGGTCGCCACGAGGTGCAGCAGATG
CTGCGCCTGTTCGCCGCCGACGGCAGCCGCGAATTGGAACAGATCCGTGGCATACGCAGCGTGCAATCGCGCGGTGTCAC
CGCACATATCGGCGGGGATGCCTGGCGCGGCTTCTGCCGTGGCACCGAGATCGCCATCGAGTTCGATGCCGACGCCTTTG
CAGGGGGATCGCCGCTGTTGATGGGCGCCGTGCTGGCGCGCTTCTTTGCGTTGTACACCTCGGTCAATTCCTTTGTGCGG
CTGGTGGTGCGCCGCGGAGACGAGATATGGAAGCAATGGGAGCCGATGACCGGCTGCCAGACGCTGCTGTGA