Detailed information of component protein


Summary

Component ID T6CP259596
Component protein type TssG
T6SS ID (Type) T6SS17507 experimental (Type i4a)
Strain Cupriavidus pinatubonensis JMP134
Replicon chromosome I
Sequence Protein sequence (358 a.a.); Nucleotide sequence (1074 bp)
Reference
experimental Experimental investigation has been performed on this T6SS
External database links

Locus tag (Gene) REUT_RS08700
Coordinate (Strand) 1867512..1868585 (-)
NCBI ID WP_041679606.1
RefSeq NC_007347
Uniprot ID UPI000039FD08
KEGG ID -
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
T6SS_TssG PF06996.13 1.4e-75 23..334
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Outside 1-357 MEAMGADDRLPDAAVIDRLAANPAAFNLFQAIGLLERATPGAHPLGHGDGSGEAVRLRGLVSLAFQPRDVASVVAGAPQDADHADNEPPREAGQPPYTLTTPALSLAGANGPLPLPYTELLLERRAARDHAMAELLDIFNHRFLSFLYRGRVKHAPGLGAQAPATTTLAACLDALSNLGLRAGPRGPGGAAPWLRHAGLLGAAPRSMEGLLALLGDRLGLRVRGRQFVGGWLAVERTDSVRLGARGAPGTQLGGGAVLGRRCWDQSAGIGLDLQVPDARRLEGLLPGGPDHDLVAWLVRSHASQPFDVQLALQVAERPATRLGGGARLGWTAWLAGGAAARPAPVRLSLRVGADTLS


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.9527 - -


  Protein sequence: 358 a.a.    

>T6CP259596 NC_007347:c1868585-1867512 [Cupriavidus pinatubonensis JMP134] [TssG]
MEAMGADDRLPDAAVIDRLAANPAAFNLFQAIGLLERATPGAHPLGHGDGSGEAVRLRGLVSLAFQPRDVASVVAGAPQD
ADHADNEPPREAGQPPYTLTTPALSLAGANGPLPLPYTELLLERRAARDHAMAELLDIFNHRFLSFLYRGRVKHAPGLGA
QAPATTTLAACLDALSNLGLRAGPRGPGGAAPWLRHAGLLGAAPRSMEGLLALLGDRLGLRVRGRQFVGGWLAVERTDSV
RLGARGAPGTQLGGGAVLGRRCWDQSAGIGLDLQVPDARRLEGLLPGGPDHDLVAWLVRSHASQPFDVQLALQVAERPAT
RLGGGARLGWTAWLAGGAAARPAPVRLSLRVGADTLS*

  Nucleotide sequence: 1074 bp    

>T6CP259596 NC_007347:c1868585-1867512 [Cupriavidus pinatubonensis JMP134] [TssG]
ATGGAAGCAATGGGAGCCGATGACCGGCTGCCAGACGCTGCTGTGATCGACCGTCTCGCCGCCAACCCCGCCGCGTTCAA
CCTGTTCCAGGCCATCGGCCTGCTGGAACGGGCCACGCCCGGTGCGCATCCGCTCGGCCACGGCGACGGCAGCGGCGAGG
CCGTACGCCTGCGCGGGCTGGTTTCGCTGGCCTTCCAGCCGCGCGATGTGGCATCGGTGGTTGCCGGTGCGCCGCAAGAT
GCCGACCATGCCGACAACGAGCCGCCTCGTGAGGCCGGCCAGCCGCCCTACACGCTGACCACGCCGGCCCTGTCGCTGGC
GGGGGCAAATGGGCCGCTGCCGCTGCCATACACCGAGCTACTGCTGGAGCGGCGCGCGGCGCGCGACCATGCCATGGCGG
AGTTGCTCGACATCTTCAATCACCGCTTCCTGTCCTTCCTCTATCGCGGTCGTGTCAAGCACGCGCCGGGGCTGGGCGCG
CAGGCACCTGCCACCACGACGCTGGCCGCCTGCCTCGACGCGCTCAGCAACCTGGGCCTGCGTGCCGGCCCGCGCGGTCC
GGGCGGCGCTGCGCCCTGGCTGCGCCACGCCGGCCTGCTGGGCGCCGCGCCGCGCTCGATGGAAGGGCTGCTGGCCTTGC
TGGGCGACCGGCTCGGGCTGCGGGTGCGCGGCCGCCAGTTCGTCGGCGGCTGGCTGGCGGTGGAGCGCACCGACTCGGTC
CGCCTGGGCGCGCGTGGCGCACCGGGGACGCAGCTCGGCGGAGGCGCGGTGCTGGGACGGCGGTGCTGGGACCAGTCCGC
CGGCATCGGCCTGGACCTGCAGGTGCCGGACGCGCGCCGGCTGGAGGGGCTGCTGCCCGGTGGCCCCGATCACGACCTGG
TTGCATGGCTGGTGCGCAGCCATGCGTCGCAACCCTTCGACGTGCAGCTCGCGCTGCAGGTTGCCGAGCGGCCGGCCACA
CGCCTGGGCGGCGGCGCCCGGTTGGGCTGGACTGCGTGGCTGGCCGGTGGTGCTGCTGCACGTCCCGCACCGGTGCGGCT
GTCGCTGCGTGTCGGCGCCGACACGCTTTCATGA