Detailed information of component protein


Summary

Component ID T6CP259595
Component protein type TssH
T6SS ID (Type) T6SS17507 experimental (Type i4a)
Strain Cupriavidus pinatubonensis JMP134
Replicon chromosome I
Sequence Protein sequence (899 a.a.); Nucleotide sequence (2697 bp)
Reference
experimental Experimental investigation has been performed on this T6SS
External database links

Locus tag (Gene) REUT_RS08695
Coordinate (Strand) 1864803..1867499 (-)
NCBI ID WP_011297890.1
RefSeq NC_007347
Uniprot ID Q470U1_CUPPJ
KEGG ID reu:Reut_A1727
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
AAA_2 PF07724.16 4.7e-36 625..789
AAA_lid_9 PF17871.3 1.5e-28 369..460
ClpB_D2-small PF10431.11 3.3e-13 797..869
AAA PF00004.31 8.6e-09 228..359
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Outside 1-898 MDIDIRTLLSRLNPECRQAMEAAAQLCVRHTHYNVDVEHLLVQLLEVEARDLHVILEHFGIARETLLAQLHKAIDGFKRGNGRTPALSPNFSPLFQEAWLLSSMLLGEQQVRAGTLMLALLEVESLRGLLLESAPSLLKIPRTALREALPVLLGAGAGGGAPADVAGRAMPAMPQASAGGAQKSALNQYTIDLTALAREGAIDPVRGRDGEIRQLVDVLLRRRQNNPILTGEAGVGKTAVVEGFAQRIVAGDVPPALRNVSVRSLDLALLQAGAGVKGEFENRLKSVIAEVAASPVPVILFIDEAHQLIGAGGSEGQGDAANLLKPALARGELRTIAATTWAEYKKYIERDPALARRFQIVKVEEPSEPVAVEMLRGMVKKLEAHHGVEILDDAVRDAVKLSHRYVSGRQLPDKAISVLDTACARVAIAQNGVPAEIESLGRSIENTENQLRILRHEAATGASRADEIATATRQLEEARSQHARLSDKLVMEKRVVDEILAWRRRIATCLAGQAGGEAGVDAQDSEDSDDSAESLSANLLRLEKGLEAVQCDEPMVPVCVNSAAVAEVISSWTGIPVGRMLADELHTVLHLHDKLAERVVGQDEALDAIARRIRTFRADLDDPGKPVGVFLLVGPSGVGKTETACALADLLYGGERNMITVNMSEFQEAHSVSGLKGAPPGYVGYGRGGVLTEAVRRRPYSVVLLDEMEKAHPDVLELFFQVFDKGMMEDGEGVPIDFRNTVILLTSNAAQDVITEASQGGRRPPPEELVERLRPALLQRFSPAFLARMVLVPYYHLGDAQITAIVDLKLGRMAQRFERNHNARLTWDDALARTIVQRCSEVDSGARNVDHILTQSVLPELAHQVLERMSIAEPFGGVHLSLDAQGGLAFRFLPPAEA


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.9974 - -


  Protein sequence: 899 a.a.    

>T6CP259595 NC_007347:c1867499-1864803 [Cupriavidus pinatubonensis JMP134] [TssH]
MDIDIRTLLSRLNPECRQAMEAAAQLCVRHTHYNVDVEHLLVQLLEVEARDLHVILEHFGIARETLLAQLHKAIDGFKRG
NGRTPALSPNFSPLFQEAWLLSSMLLGEQQVRAGTLMLALLEVESLRGLLLESAPSLLKIPRTALREALPVLLGAGAGGG
APADVAGRAMPAMPQASAGGAQKSALNQYTIDLTALAREGAIDPVRGRDGEIRQLVDVLLRRRQNNPILTGEAGVGKTAV
VEGFAQRIVAGDVPPALRNVSVRSLDLALLQAGAGVKGEFENRLKSVIAEVAASPVPVILFIDEAHQLIGAGGSEGQGDA
ANLLKPALARGELRTIAATTWAEYKKYIERDPALARRFQIVKVEEPSEPVAVEMLRGMVKKLEAHHGVEILDDAVRDAVK
LSHRYVSGRQLPDKAISVLDTACARVAIAQNGVPAEIESLGRSIENTENQLRILRHEAATGASRADEIATATRQLEEARS
QHARLSDKLVMEKRVVDEILAWRRRIATCLAGQAGGEAGVDAQDSEDSDDSAESLSANLLRLEKGLEAVQCDEPMVPVCV
NSAAVAEVISSWTGIPVGRMLADELHTVLHLHDKLAERVVGQDEALDAIARRIRTFRADLDDPGKPVGVFLLVGPSGVGK
TETACALADLLYGGERNMITVNMSEFQEAHSVSGLKGAPPGYVGYGRGGVLTEAVRRRPYSVVLLDEMEKAHPDVLELFF
QVFDKGMMEDGEGVPIDFRNTVILLTSNAAQDVITEASQGGRRPPPEELVERLRPALLQRFSPAFLARMVLVPYYHLGDA
QITAIVDLKLGRMAQRFERNHNARLTWDDALARTIVQRCSEVDSGARNVDHILTQSVLPELAHQVLERMSIAEPFGGVHL
SLDAQGGLAFRFLPPAEA*

  Nucleotide sequence: 2697 bp    

>T6CP259595 NC_007347:c1867499-1864803 [Cupriavidus pinatubonensis JMP134] [TssH]
ATGGACATCGATATCCGCACACTGCTGAGCCGGCTTAATCCGGAATGCCGCCAGGCCATGGAGGCCGCGGCGCAACTCTG
CGTGCGCCACACCCACTACAACGTCGATGTCGAGCACCTGTTGGTGCAGCTGCTGGAGGTCGAGGCGCGCGACCTGCACG
TCATCCTCGAGCACTTCGGCATTGCGCGCGAGACGCTGCTGGCGCAGCTGCACAAGGCCATCGACGGCTTCAAGCGCGGC
AATGGCCGTACCCCGGCGCTGTCGCCCAACTTCTCGCCGCTGTTCCAGGAGGCCTGGCTGCTCAGCTCGATGCTGCTGGG
CGAGCAACAGGTGCGCGCCGGCACGCTGATGCTGGCGCTGCTTGAAGTGGAAAGCCTGCGCGGCCTGCTTCTGGAGTCGG
CGCCGTCCCTGCTGAAGATTCCACGCACGGCATTGCGCGAGGCGCTGCCCGTGCTGCTGGGCGCTGGCGCTGGCGGCGGC
GCGCCGGCCGATGTAGCCGGGCGCGCCATGCCGGCAATGCCGCAGGCCAGCGCCGGCGGCGCACAGAAATCCGCGCTGAA
CCAATACACGATCGACCTGACGGCGCTGGCGCGCGAAGGCGCGATCGATCCGGTGCGCGGGCGCGACGGCGAGATCCGCC
AGCTTGTGGACGTACTGCTGCGCCGTCGCCAGAACAACCCCATCCTGACCGGCGAGGCCGGCGTCGGCAAGACCGCCGTA
GTGGAAGGCTTTGCCCAGCGCATCGTGGCCGGCGACGTGCCGCCGGCACTGCGCAATGTCTCGGTGCGCTCGCTCGATCT
GGCCTTGCTGCAGGCCGGCGCTGGCGTCAAGGGCGAGTTCGAGAACCGGCTCAAGTCGGTAATTGCCGAGGTCGCGGCCT
CGCCGGTACCGGTGATCCTGTTCATCGACGAGGCCCACCAGCTGATCGGCGCGGGTGGCAGCGAAGGGCAGGGCGATGCC
GCCAACCTGCTCAAGCCGGCGCTGGCACGCGGCGAGCTGCGCACCATCGCCGCGACCACTTGGGCCGAGTACAAGAAGTA
CATCGAGCGCGATCCAGCACTGGCGCGCCGCTTCCAGATCGTCAAGGTGGAGGAGCCCAGCGAGCCGGTGGCCGTGGAGA
TGCTGCGCGGCATGGTGAAGAAGCTCGAAGCGCACCATGGCGTGGAGATCCTCGACGATGCCGTGCGCGATGCGGTCAAG
CTGTCGCACCGCTATGTGTCGGGACGCCAGTTGCCGGACAAGGCGATCAGCGTGCTCGATACCGCTTGCGCGCGCGTGGC
GATCGCGCAGAACGGCGTGCCGGCAGAGATCGAATCGCTCGGGCGCAGCATCGAAAACACCGAGAACCAGTTGCGCATTC
TGCGGCATGAGGCGGCCACCGGTGCCAGCCGTGCCGACGAGATTGCCACTGCCACGCGCCAGCTCGAGGAGGCACGCAGC
CAGCATGCGCGCCTGTCCGACAAGCTGGTGATGGAAAAGCGCGTAGTCGACGAGATCCTGGCATGGCGGCGCAGGATTGC
CACGTGCCTGGCCGGCCAGGCGGGTGGCGAAGCGGGCGTGGATGCACAGGACAGCGAAGACAGCGACGACAGCGCGGAAT
CGCTGAGCGCCAACCTGCTGCGGCTTGAAAAGGGCCTGGAGGCCGTGCAGTGCGACGAGCCAATGGTGCCGGTGTGCGTC
AATTCGGCAGCGGTGGCCGAGGTCATCTCGAGCTGGACTGGCATCCCGGTGGGCCGCATGCTGGCCGACGAGCTTCACAC
CGTGCTTCACCTGCACGACAAGCTGGCCGAGCGGGTGGTCGGCCAGGACGAGGCGCTCGATGCGATCGCGCGGCGCATCC
GAACCTTCCGCGCGGATCTCGACGACCCCGGCAAGCCGGTGGGCGTGTTCCTGCTGGTCGGTCCGAGCGGCGTTGGCAAG
ACCGAGACCGCCTGCGCGCTGGCGGACTTGTTGTACGGTGGCGAGCGCAACATGATCACCGTCAACATGTCGGAATTCCA
GGAGGCGCACAGCGTGTCGGGGCTCAAGGGCGCGCCCCCGGGCTATGTCGGCTACGGGCGCGGGGGCGTGCTGACCGAAG
CGGTGCGGCGGCGCCCCTATAGCGTGGTGCTGCTCGACGAAATGGAGAAGGCGCACCCCGACGTGCTGGAGCTGTTCTTC
CAGGTATTCGACAAGGGCATGATGGAAGACGGCGAAGGGGTACCGATCGACTTCCGCAACACGGTCATCCTGCTGACCTC
GAACGCGGCCCAGGACGTCATCACCGAGGCCTCGCAAGGCGGCCGGCGCCCGCCACCGGAAGAACTTGTAGAACGCCTGC
GTCCGGCCCTGCTGCAGCGCTTCAGCCCGGCCTTCCTGGCGCGCATGGTGCTGGTGCCGTACTACCACCTTGGCGATGCG
CAGATCACCGCCATCGTCGACCTCAAGCTTGGCCGGATGGCGCAGCGCTTCGAGCGCAACCACAACGCCCGCCTGACCTG
GGACGACGCGCTGGCGCGCACCATCGTGCAGCGCTGCAGCGAAGTCGACAGCGGCGCGCGCAACGTCGACCATATCCTGA
CCCAGTCGGTGCTGCCGGAGCTCGCCCATCAGGTGCTGGAGCGCATGTCGATCGCCGAGCCGTTCGGCGGTGTGCATCTC
TCGCTTGACGCGCAGGGCGGCCTGGCCTTCCGTTTCCTGCCGCCTGCGGAGGCCTGA