Detailed information of component protein


Summary

Component ID T6CP259594
Component protein type TssI
T6SS ID (Type) T6SS17507 experimental (Type i4a)
Strain Cupriavidus pinatubonensis JMP134
Replicon chromosome I
Sequence Protein sequence (643 a.a.); Nucleotide sequence (1929 bp)
Reference
experimental Experimental investigation has been performed on this T6SS
External database links

Locus tag (Gene) REUT_RS08690
Coordinate (Strand) 1862870..1864798 (-)
NCBI ID WP_011297889.1
RefSeq NC_007347
Uniprot ID Q470U2_CUPPJ
KEGG ID reu:Reut_A1726
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
Phage_GPD PF05954.13 3.2e-85 32..327
Phage_base_V PF04717.14 8.1e-16 374..442
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Outside 1-642 MIPATATQSDSFATVTTPFGDDVLLLDGFAGREALSELFSFQLRMRSADKALDASRIVGQKVTVRLQRPGGFLRCFNGIVTRFAHTGADPSHAFYSAELAPRLWLLTLARDRRIFQNQSALDIIRTVLGEFEVAFDARVTASRYPVREYCVQYDESPLQFISRLMEEEGIFYYFTFSDGAHTMVLGDSPSAHAALAHEAELWGGQPGEQAAGLPMLAAFRMEQGLGPANHVLVDYDYVQAQTSQGSAQPDSSAPGARQYIFPGRHKDASDAARKAAVRVAAQQVEARSGSGESNCHGLAAGSTFTLNGHVNAALNAEYVVRAVEHSVAGSHYANSFTVFPLAVPFRAPLVTPRPLVAGTHTATVVGSQGEEIWTDQHGRIKLKFHWDQAPGADQDSSCWVRVAQGMAGQGWGHLFLPRVGQEVVVSYVDGDPDRPLVTGSVYNGQVTPPVTLPSMQTQSVIRSRTSKNGSAGNELRMEDKAGAEELYLHAQRDMNVAVENKLSTTVVGAGESHVVQKGDRLVEVQSGNETHKVSGTRSLEVTGDETRTNGAAFTQEVSGAYKLKVSGDLVIDVTGAITIKSAGSVAIEAGTSLSNKAGTTLANKAGTTLSGEGLTVQQKASASHTVESGGMLELKGAMVKLN


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.9568 - -


  Protein sequence: 643 a.a.    

>T6CP259594 NC_007347:c1864798-1862870 [Cupriavidus pinatubonensis JMP134] [TssI]
MIPATATQSDSFATVTTPFGDDVLLLDGFAGREALSELFSFQLRMRSADKALDASRIVGQKVTVRLQRPGGFLRCFNGIV
TRFAHTGADPSHAFYSAELAPRLWLLTLARDRRIFQNQSALDIIRTVLGEFEVAFDARVTASRYPVREYCVQYDESPLQF
ISRLMEEEGIFYYFTFSDGAHTMVLGDSPSAHAALAHEAELWGGQPGEQAAGLPMLAAFRMEQGLGPANHVLVDYDYVQA
QTSQGSAQPDSSAPGARQYIFPGRHKDASDAARKAAVRVAAQQVEARSGSGESNCHGLAAGSTFTLNGHVNAALNAEYVV
RAVEHSVAGSHYANSFTVFPLAVPFRAPLVTPRPLVAGTHTATVVGSQGEEIWTDQHGRIKLKFHWDQAPGADQDSSCWV
RVAQGMAGQGWGHLFLPRVGQEVVVSYVDGDPDRPLVTGSVYNGQVTPPVTLPSMQTQSVIRSRTSKNGSAGNELRMEDK
AGAEELYLHAQRDMNVAVENKLSTTVVGAGESHVVQKGDRLVEVQSGNETHKVSGTRSLEVTGDETRTNGAAFTQEVSGA
YKLKVSGDLVIDVTGAITIKSAGSVAIEAGTSLSNKAGTTLANKAGTTLSGEGLTVQQKASASHTVESGGMLELKGAMVK
LN*

  Nucleotide sequence: 1929 bp    

>T6CP259594 NC_007347:c1864798-1862870 [Cupriavidus pinatubonensis JMP134] [TssI]
ATGATTCCGGCCACCGCCACCCAGTCCGACAGCTTCGCCACGGTCACCACGCCGTTTGGCGACGATGTGCTGCTGCTCGA
CGGATTTGCCGGGCGCGAGGCGCTTTCCGAGCTGTTTTCCTTCCAGCTGCGCATGCGCTCGGCGGACAAGGCGCTCGATG
CCAGCCGCATCGTTGGCCAGAAGGTCACGGTCAGGCTCCAGCGGCCGGGCGGCTTCCTGCGTTGTTTCAACGGCATCGTG
ACGCGCTTCGCCCATACCGGCGCCGACCCCAGCCACGCGTTCTACAGCGCCGAGCTGGCGCCGCGCCTGTGGCTGCTGAC
GCTGGCGCGCGACCGCAGGATCTTCCAGAACCAGAGCGCGCTCGACATCATCCGCACCGTGCTGGGCGAGTTCGAGGTGG
CATTCGACGCGCGCGTCACCGCTTCGCGCTACCCGGTGCGCGAGTACTGCGTGCAGTACGACGAAAGCCCCCTGCAGTTC
ATCTCGCGGCTGATGGAGGAAGAGGGCATCTTCTACTACTTCACCTTTTCCGACGGCGCGCACACCATGGTGCTGGGTGA
CAGTCCCTCGGCCCACGCCGCGCTGGCCCACGAGGCCGAGCTGTGGGGCGGCCAGCCGGGCGAGCAGGCGGCGGGCCTGC
CGATGCTGGCGGCCTTCCGCATGGAACAGGGACTCGGTCCGGCCAACCACGTGCTGGTCGACTATGACTATGTGCAGGCG
CAGACCAGCCAGGGCAGTGCGCAGCCGGACTCGAGCGCGCCCGGCGCGCGCCAGTACATTTTCCCGGGGCGCCACAAGGA
TGCCTCGGATGCCGCGCGCAAGGCGGCGGTGCGAGTGGCCGCACAGCAGGTCGAGGCTCGCTCCGGCAGCGGCGAGAGCA
ACTGTCACGGCCTTGCCGCAGGGAGTACCTTCACCCTCAACGGCCACGTCAATGCGGCACTGAACGCCGAGTACGTGGTG
CGCGCGGTCGAGCACTCGGTGGCCGGCAGCCACTATGCCAACAGCTTCACGGTGTTTCCGCTGGCGGTGCCATTCCGCGC
GCCGCTGGTAACGCCGCGTCCGCTGGTGGCCGGCACCCATACCGCAACCGTGGTCGGCTCCCAGGGCGAGGAAATCTGGA
CGGACCAGCACGGCCGTATCAAGCTCAAGTTCCACTGGGACCAGGCGCCCGGCGCCGACCAGGACAGCTCGTGCTGGGTC
CGGGTGGCGCAGGGCATGGCTGGCCAGGGCTGGGGCCATCTGTTCCTGCCACGCGTGGGGCAGGAGGTGGTAGTCAGCTA
TGTCGACGGCGATCCCGACCGGCCGCTGGTGACCGGCAGCGTCTACAACGGCCAGGTGACGCCGCCGGTGACGCTTCCCT
CGATGCAGACCCAGAGCGTGATCCGCTCGCGCACTTCCAAGAACGGCAGCGCCGGCAACGAGCTGCGCATGGAGGACAAG
GCCGGCGCCGAAGAGCTCTACCTGCACGCGCAGCGCGACATGAACGTGGCGGTGGAAAACAAGCTGTCCACCACCGTGGT
CGGCGCTGGCGAGTCGCATGTTGTCCAGAAGGGTGACCGGCTGGTCGAGGTGCAGTCGGGCAACGAAACTCACAAGGTGA
GCGGCACCCGTAGCCTCGAGGTGACCGGTGACGAGACCCGCACCAACGGCGCCGCCTTCACCCAGGAGGTCAGCGGGGCC
TACAAGCTCAAGGTGTCTGGCGATCTGGTCATCGACGTGACGGGCGCCATCACCATCAAGTCGGCAGGCTCGGTGGCGAT
TGAGGCTGGCACTTCGCTGAGCAACAAGGCGGGCACCACGCTGGCAAACAAGGCAGGCACTACGCTGAGTGGCGAGGGCC
TGACCGTGCAGCAGAAGGCGTCGGCCTCGCACACGGTGGAAAGCGGCGGCATGCTGGAGCTCAAGGGCGCCATGGTGAAA
CTGAACTGA