Detailed information of component protein


Summary

Component ID T6CP259591
Component protein type TssK
T6SS ID (Type) T6SS17507 experimental (Type i4a)
Strain Cupriavidus pinatubonensis JMP134
Replicon chromosome I
Sequence Protein sequence (443 a.a.); Nucleotide sequence (1329 bp)
Reference
experimental Experimental investigation has been performed on this T6SS
External database links

Locus tag (Gene) REUT_RS08645
Coordinate (Strand) 1855058..1856386 (-)
NCBI ID WP_011297880.1
RefSeq NC_007347
Uniprot ID Q470V1_CUPPJ
KEGG ID reu:Reut_A1717
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
T6SS_VasE PF05936.14 5.6e-38 23..343
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Outside 1-442 MRDNLTLVDRVEWHEGMLLAPQHFQLLAARLDSLVAWQTLAAAPFSWGVRRLVFDTGLLPVGIVRVLQLDAVMPDGTAVSYSGDDERLGPLELSLAPFAEQLASGTVDIHLVLPVAGTMRRDAQVRRFRSVLGAPVEDEVSQAPPADIARLVPNLALSAGAQPSSLYVSLCLGTAYKDNEVVRLGERLPPLLEVGRETPLWTAVASMLGQLRSKAAFVAKQTAVPSSKADDRLTQLELRDRLRCLLSELPLVEAVLRTPHLHPLALYLALASLLGSLSMLRPGALPPVPHDYDHANPMTAFAPLLRAVRESLAEVSEAYREHKFEFRHGAFEIALQPDWIGEHLVVGLRGQSERDLRTWMDGAMVGSQSAYPSLRAHRVLGAARRVVEHADELGVRAGSGYVLFEIETDPALIHGNEALVIGNPNEGASAQRPQEVLLFVKG


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.9908 - -


  Protein sequence: 443 a.a.    

>T6CP259591 NC_007347:c1856386-1855058 [Cupriavidus pinatubonensis JMP134] [TssK]
MRDNLTLVDRVEWHEGMLLAPQHFQLLAARLDSLVAWQTLAAAPFSWGVRRLVFDTGLLPVGIVRVLQLDAVMPDGTAVS
YSGDDERLGPLELSLAPFAEQLASGTVDIHLVLPVAGTMRRDAQVRRFRSVLGAPVEDEVSQAPPADIARLVPNLALSAG
AQPSSLYVSLCLGTAYKDNEVVRLGERLPPLLEVGRETPLWTAVASMLGQLRSKAAFVAKQTAVPSSKADDRLTQLELRD
RLRCLLSELPLVEAVLRTPHLHPLALYLALASLLGSLSMLRPGALPPVPHDYDHANPMTAFAPLLRAVRESLAEVSEAYR
EHKFEFRHGAFEIALQPDWIGEHLVVGLRGQSERDLRTWMDGAMVGSQSAYPSLRAHRVLGAARRVVEHADELGVRAGSG
YVLFEIETDPALIHGNEALVIGNPNEGASAQRPQEVLLFVKG*

  Nucleotide sequence: 1329 bp    

>T6CP259591 NC_007347:c1856386-1855058 [Cupriavidus pinatubonensis JMP134] [TssK]
ATGCGTGACAACCTGACGCTGGTTGACCGTGTCGAATGGCACGAAGGGATGCTGCTGGCACCGCAGCATTTCCAGTTGTT
GGCAGCCCGCCTCGATTCGCTGGTGGCCTGGCAGACGCTGGCAGCAGCCCCGTTCAGCTGGGGCGTTCGGCGCCTGGTGT
TCGACACGGGCCTGCTGCCGGTCGGCATCGTGCGCGTGCTGCAACTCGACGCGGTGATGCCGGATGGCACCGCGGTCTCC
TACAGTGGCGACGATGAACGGCTAGGGCCGCTGGAACTGTCGCTGGCGCCGTTTGCCGAGCAACTGGCCAGTGGCACGGT
CGACATCCACCTGGTGCTGCCGGTGGCGGGAACCATGCGGCGCGACGCACAGGTGCGGCGCTTCCGCTCGGTGCTCGGCG
CCCCGGTCGAGGACGAGGTATCGCAGGCGCCGCCGGCGGACATTGCACGGCTGGTGCCCAACCTCGCCCTCAGTGCCGGC
GCACAGCCATCCTCGCTCTATGTATCGCTGTGCCTGGGCACCGCCTACAAGGACAACGAAGTGGTGCGGCTGGGGGAGCG
CCTGCCACCGCTGCTCGAGGTGGGGCGCGAGACCCCTTTGTGGACGGCGGTGGCGTCGATGCTCGGGCAGTTGCGCAGCA
AGGCCGCATTCGTTGCCAAGCAGACCGCGGTGCCATCGTCCAAGGCCGACGATCGCCTGACCCAGCTTGAACTCCGGGAC
CGGCTGCGCTGCCTGCTGAGCGAGCTGCCGCTGGTCGAGGCGGTTCTGCGCACGCCCCATCTGCATCCGCTTGCGCTGTA
CCTCGCGCTCGCCTCGCTGCTGGGCTCGCTCAGCATGCTGCGCCCCGGTGCGCTGCCGCCGGTGCCGCACGATTACGACC
ACGCCAACCCTATGACCGCGTTCGCGCCGCTGCTGCGTGCGGTGCGCGAGTCGCTGGCAGAGGTCAGCGAAGCCTACCGC
GAGCACAAGTTCGAGTTCCGCCACGGCGCGTTCGAGATCGCGTTGCAACCTGACTGGATCGGCGAACACCTGGTGGTGGG
GCTGCGCGGCCAGTCCGAGCGCGACTTGCGGACATGGATGGATGGCGCCATGGTGGGCTCGCAGTCGGCCTATCCGTCGT
TGCGTGCGCACCGCGTGCTCGGCGCCGCGCGCCGCGTCGTCGAGCATGCCGACGAACTCGGCGTGCGCGCTGGCTCCGGC
TATGTGTTGTTCGAGATCGAGACCGATCCGGCGCTGATCCACGGCAACGAGGCCCTGGTGATCGGCAATCCGAACGAAGG
TGCCAGCGCGCAGCGGCCGCAGGAAGTACTGCTGTTCGTCAAGGGATGA