Detailed information of component protein


Summary

Component ID T6CP259588
Component protein type TssA
T6SS ID (Type) T6SS17507 experimental (Type i4a)
Strain Cupriavidus pinatubonensis JMP134
Replicon chromosome I
Sequence Protein sequence (382 a.a.); Nucleotide sequence (1146 bp)
Reference
experimental Experimental investigation has been performed on this T6SS
External database links

Locus tag (Gene) REUT_RS08630
Coordinate (Strand) 1848935..1850080 (-)
NCBI ID WP_049796458.1
RefSeq NC_007347
Uniprot ID UPI00067427FF
KEGG ID -
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
ImpA_N PF06812.14 2.4e-32 22..143
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Outside 1-381 MRPPNLAEAAGVPLLDLEALISPVPGDARAGISLRYDALYPAIRAARHQDDATLPMGEWERPLAKADWGRVAALCSEALVGRSKDFQLAAWLCEAWTHMHGVAGVVAGTRALSALAQHYWDDGHPAIEHGDSDARCAPFAWLNETLPLVLALHVPLLVLPDLDVPTVSLERWERTATGGEEGLNRDSLVRRAGEGRNQAALVAMRRQLDAAMQGWHEFDLAIDARLGGEAPSLRRVPEALQRLQRAVATLLQGYDEVLQGQAPDAGASAVMDAAADIATEASMNEWQEPIRTATQPLATASVAGAGLAAGQPANGIANRTHAYRLLEEIADFLAQNEPHSPTPYLLRRAVSWGQMPLAELMRDILREDGDVHRYLALLEQQ


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.9228 - -


  Protein sequence: 382 a.a.    

>T6CP259588 NC_007347:c1850080-1848935 [Cupriavidus pinatubonensis JMP134] [TssA]
MRPPNLAEAAGVPLLDLEALISPVPGDARAGISLRYDALYPAIRAARHQDDATLPMGEWERPLAKADWGRVAALCSEALV
GRSKDFQLAAWLCEAWTHMHGVAGVVAGTRALSALAQHYWDDGHPAIEHGDSDARCAPFAWLNETLPLVLALHVPLLVLP
DLDVPTVSLERWERTATGGEEGLNRDSLVRRAGEGRNQAALVAMRRQLDAAMQGWHEFDLAIDARLGGEAPSLRRVPEAL
QRLQRAVATLLQGYDEVLQGQAPDAGASAVMDAAADIATEASMNEWQEPIRTATQPLATASVAGAGLAAGQPANGIANRT
HAYRLLEEIADFLAQNEPHSPTPYLLRRAVSWGQMPLAELMRDILREDGDVHRYLALLEQQ*

  Nucleotide sequence: 1146 bp    

>T6CP259588 NC_007347:c1850080-1848935 [Cupriavidus pinatubonensis JMP134] [TssA]
ATGAGACCGCCGAATCTGGCCGAAGCCGCGGGCGTGCCGCTGCTGGACCTTGAAGCCCTGATCAGCCCGGTTCCGGGCGA
CGCGCGCGCCGGCATCTCGCTGCGCTACGACGCCCTCTATCCGGCAATCCGCGCCGCGCGACATCAGGATGACGCCACGC
TGCCAATGGGCGAGTGGGAGCGCCCACTGGCCAAGGCTGACTGGGGCCGCGTGGCCGCGCTGTGCAGCGAGGCGCTGGTC
GGGCGCAGCAAAGACTTCCAGCTAGCCGCCTGGCTGTGCGAGGCCTGGACCCACATGCACGGTGTGGCCGGCGTTGTGGC
AGGCACGCGTGCCCTCAGCGCGCTGGCGCAGCACTACTGGGACGACGGCCATCCCGCCATCGAGCACGGCGACAGCGACG
CGCGCTGCGCGCCCTTCGCCTGGCTCAACGAGACGCTGCCGCTGGTGCTGGCGCTGCACGTGCCGCTGCTGGTCTTGCCC
GATCTGGATGTGCCCACGGTCTCTCTGGAGCGCTGGGAACGGACGGCCACGGGCGGTGAGGAGGGGCTGAACCGCGACTC
CCTGGTGCGGCGCGCCGGCGAGGGGCGCAACCAGGCTGCGCTGGTGGCAATGCGGCGCCAGCTCGACGCTGCCATGCAGG
GTTGGCACGAGTTCGATCTCGCCATCGATGCCCGGCTTGGCGGCGAAGCCCCCAGCCTGCGGCGCGTGCCGGAGGCGCTC
CAGCGCCTGCAGCGCGCTGTCGCCACGCTGCTGCAGGGGTATGACGAAGTGCTGCAGGGACAGGCGCCGGACGCCGGTGC
GTCGGCGGTCATGGATGCCGCAGCGGACATCGCAACGGAGGCCAGCATGAATGAATGGCAGGAGCCGATACGCACTGCGA
CTCAACCCTTGGCCACGGCCTCAGTGGCCGGCGCCGGCTTGGCCGCAGGCCAGCCGGCGAACGGCATTGCGAACCGGACC
CATGCCTACCGGCTGCTCGAGGAAATCGCTGATTTCCTTGCGCAGAACGAGCCGCATAGCCCTACGCCTTACCTGCTCAG
GCGCGCGGTGAGCTGGGGCCAGATGCCGCTTGCAGAACTGATGCGCGACATCCTGCGCGAGGACGGCGACGTCCATCGCT
ACCTGGCGTTGCTGGAACAGCAATAG