Detailed information of component protein


Summary

Component ID T6CP259587
Component protein type TssH
T6SS ID (Type) T6SS17506 experimental (Type i1)
Strain Aliivibrio fischeri strain ES401
Replicon chromosome
Sequence Protein sequence (889 a.a.); Nucleotide sequence (2667 bp)
Reference
experimental Experimental investigation has been performed on this T6SS
External database links

Locus tag (Gene) VFES401_RS15840
Coordinate (Strand) 390210..392876 (+)
NCBI ID WP_135354019.1
RefSeq NZ_SRJG01000005
Uniprot ID UPI00107EA451
KEGG ID -
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
AAA_2 PF07724.16 6.2e-44 622..787
AAA_lid_9 PF17871.3 1.7e-31 357..452
ClpB_D2-small PF10431.11 2.3e-14 793..868
AAA PF00004.31 8e-10 220..348
Clp_N PF02861.22 3.2e-05 24..73
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Outside 1-888 MININLSSLIQRLHPITKVALEDAAALAVSERASEVQIEHFLLSLLERPNSDFDQLLAHFECSENLLRQAIKSTLENSHKSNGGKPVFSAMLIEWLQEAWLVSSLDLSETQIRSGALLLTLISNPLRYGQHGYSSLLENINPETLKRNFAELTSRSIESQVATSEQTHAREDGSALSKFTTDFTGKARKGEIDPVFCRDQEIRQIIDILARRRKNNPIAVGEPGVGKTAVVEGLALKIVQGEVPDCLKGVELYGLDMGLLQAGASVKGEFEKRLNAVLDEVKNSPTPIILFIDEAHTLVGGGNQAGGSDAANLLKPALARGEVKTIAATTWSEYKKYFEKDPALARRFQLVKLDEPSTEQAALIIRGLRAVYEKSHNVYVRDDAITAAATLSDRYISGRQLPDKAIDVLDTACARVNISLNAIPAPIETLQQEIAALERELEALERDQLQQTGDRHALAAIPELKARMDEALEEQSILQHQWKKEQALINEMIELRAHLHDLTLGTPSTEEVDDENNQDKPACSQFTEEETRQAIHTCNEQLEAARGNSPLVHFEVGPDEISHVISDWTGIPMGKMLQDEAETTLNLVSSLTESIKGQPYAIEALAEGLQTAKAGLVNPDAPTGVFLLVGPSGVGKTETARAIADQMFGGERFMTTINMSEFQEKHTVSRLIGSPPGYVGYGEGGMLTEAVRQRPYSVVLLDEVEKADPEVLNLFYQVFDKGTLNDGEGRTIDFKNTLIIMTSNLATHEIETLVQQSKDIDANIVAEAIRPTLNSHFKPALLARMNVLPFLPLNDEAMTDIIIHKLNKVSKRLEKHHKLTLSYNDELVSFILANCRLAETGARNIDAVINRQLLPQLSTQLLAHDKDETHTQIVISIDEQGTLGYVFS


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.9951 - -


  Protein sequence: 889 a.a.    

>T6CP259587 NZ_SRJG01000005:390210-392876 [Aliivibrio fischeri] [TssH]
MININLSSLIQRLHPITKVALEDAAALAVSERASEVQIEHFLLSLLERPNSDFDQLLAHFECSENLLRQAIKSTLENSHK
SNGGKPVFSAMLIEWLQEAWLVSSLDLSETQIRSGALLLTLISNPLRYGQHGYSSLLENINPETLKRNFAELTSRSIESQ
VATSEQTHAREDGSALSKFTTDFTGKARKGEIDPVFCRDQEIRQIIDILARRRKNNPIAVGEPGVGKTAVVEGLALKIVQ
GEVPDCLKGVELYGLDMGLLQAGASVKGEFEKRLNAVLDEVKNSPTPIILFIDEAHTLVGGGNQAGGSDAANLLKPALAR
GEVKTIAATTWSEYKKYFEKDPALARRFQLVKLDEPSTEQAALIIRGLRAVYEKSHNVYVRDDAITAAATLSDRYISGRQ
LPDKAIDVLDTACARVNISLNAIPAPIETLQQEIAALERELEALERDQLQQTGDRHALAAIPELKARMDEALEEQSILQH
QWKKEQALINEMIELRAHLHDLTLGTPSTEEVDDENNQDKPACSQFTEEETRQAIHTCNEQLEAARGNSPLVHFEVGPDE
ISHVISDWTGIPMGKMLQDEAETTLNLVSSLTESIKGQPYAIEALAEGLQTAKAGLVNPDAPTGVFLLVGPSGVGKTETA
RAIADQMFGGERFMTTINMSEFQEKHTVSRLIGSPPGYVGYGEGGMLTEAVRQRPYSVVLLDEVEKADPEVLNLFYQVFD
KGTLNDGEGRTIDFKNTLIIMTSNLATHEIETLVQQSKDIDANIVAEAIRPTLNSHFKPALLARMNVLPFLPLNDEAMTD
IIIHKLNKVSKRLEKHHKLTLSYNDELVSFILANCRLAETGARNIDAVINRQLLPQLSTQLLAHDKDETHTQIVISIDEQ
GTLGYVFS*

  Nucleotide sequence: 2667 bp    

>T6CP259587 NZ_SRJG01000005:390210-392876 [Aliivibrio fischeri] [TssH]
ATGATAAATATAAATCTCTCTTCTTTAATACAACGTCTACACCCTATTACAAAGGTAGCTCTTGAAGATGCAGCTGCATT
AGCTGTTTCTGAACGTGCATCTGAAGTACAAATCGAACACTTTTTATTAAGCTTGCTTGAACGCCCAAATAGCGATTTTG
ACCAACTACTCGCTCATTTTGAATGTTCTGAAAATTTATTGCGCCAAGCAATCAAATCAACGCTAGAAAACAGTCATAAA
AGCAATGGTGGCAAACCAGTATTTTCAGCAATGCTAATCGAATGGTTACAAGAAGCATGGTTAGTTTCATCACTTGACTT
ATCAGAAACTCAAATTCGCTCTGGTGCATTACTGCTTACATTAATTAGCAATCCATTAAGATATGGTCAACATGGTTACT
CTTCTCTGTTGGAGAACATCAATCCAGAAACTCTGAAACGTAACTTTGCTGAATTAACATCACGTTCAATTGAATCTCAA
GTCGCTACATCAGAACAAACTCATGCTCGCGAAGATGGCTCTGCATTAAGTAAATTCACGACAGACTTTACAGGCAAAGC
ACGTAAAGGTGAAATTGACCCTGTATTCTGTCGTGACCAAGAAATTCGACAAATCATTGATATCCTAGCGCGTCGACGTA
AAAACAACCCTATCGCGGTTGGTGAACCAGGCGTTGGTAAAACAGCTGTAGTTGAAGGTTTAGCACTTAAAATTGTTCAA
GGCGAAGTTCCTGATTGCTTAAAAGGTGTTGAGCTTTACGGTTTAGACATGGGATTGCTTCAAGCAGGCGCAAGTGTAAA
AGGTGAATTTGAAAAACGTCTAAACGCTGTGCTAGACGAAGTTAAGAATTCTCCAACACCGATTATTCTTTTTATTGATG
AAGCACATACGCTCGTTGGTGGCGGTAATCAAGCTGGTGGTAGTGATGCCGCTAACTTATTGAAACCAGCGCTTGCTCGC
GGTGAAGTAAAAACCATTGCAGCAACAACTTGGTCAGAGTATAAAAAATATTTTGAAAAAGACCCTGCTTTAGCACGTCG
ATTCCAATTAGTTAAACTGGATGAGCCATCAACTGAACAAGCAGCTTTAATCATTCGTGGCCTGCGCGCTGTTTATGAAA
AATCGCACAATGTTTATGTTCGTGATGATGCAATAACTGCTGCGGCAACCTTATCGGACCGTTATATTTCTGGTCGCCAA
CTACCAGATAAAGCCATTGATGTATTAGATACAGCATGTGCTCGTGTAAACATCAGTTTAAACGCCATTCCTGCACCAAT
TGAAACTTTACAACAAGAAATTGCAGCTCTAGAGCGTGAACTTGAAGCATTAGAGCGAGATCAGTTACAGCAAACAGGTG
ATCGCCATGCCCTTGCTGCAATTCCTGAATTAAAAGCTCGTATGGATGAAGCGCTGGAAGAACAATCAATACTTCAACAT
CAGTGGAAAAAAGAGCAAGCTCTAATTAATGAAATGATTGAGTTACGTGCACACTTACATGATCTAACATTAGGCACACC
TTCTACTGAAGAAGTTGATGATGAAAATAACCAAGACAAACCTGCATGCTCTCAGTTTACAGAAGAAGAAACGCGTCAAG
CAATTCATACTTGTAACGAACAACTAGAGGCTGCTCGTGGTAATAGCCCTCTTGTTCACTTCGAGGTAGGTCCTGATGAA
ATCAGTCATGTTATTTCAGATTGGACAGGCATTCCTATGGGCAAAATGCTACAAGATGAAGCAGAAACAACGTTAAATCT
AGTATCGTCATTAACTGAAAGCATCAAAGGTCAACCTTATGCTATTGAAGCTTTAGCTGAAGGATTACAAACAGCGAAAG
CTGGATTGGTTAATCCAGATGCGCCAACCGGTGTATTCTTACTTGTTGGCCCAAGTGGTGTTGGTAAAACTGAAACCGCA
CGAGCAATTGCAGATCAAATGTTTGGTGGCGAACGCTTCATGACGACCATTAACATGTCAGAATTCCAAGAAAAACATAC
GGTTTCACGTTTAATTGGTTCACCTCCAGGTTATGTAGGTTATGGCGAAGGTGGCATGTTAACGGAAGCTGTGCGTCAAC
GTCCTTATTCTGTTGTTCTACTGGATGAAGTTGAAAAAGCGGATCCAGAAGTATTGAATTTATTCTACCAAGTATTCGAT
AAAGGCACATTAAATGACGGTGAAGGTCGAACTATCGACTTTAAGAACACCTTAATCATTATGACAAGTAACCTTGCAAC
TCATGAAATTGAAACTTTAGTACAACAATCGAAAGATATCGATGCAAATATTGTTGCAGAGGCCATTCGCCCGACGTTAA
ACAGCCACTTTAAGCCAGCATTACTAGCTCGTATGAACGTATTACCGTTCTTACCTCTAAATGATGAAGCAATGACTGAT
ATCATCATTCATAAGCTAAATAAAGTATCTAAACGCTTAGAGAAGCACCATAAGTTAACCCTAAGCTACAACGATGAGCT
AGTGTCATTCATTCTTGCTAATTGTCGACTTGCGGAAACTGGTGCGCGTAATATTGATGCTGTAATTAACCGTCAACTAT
TACCTCAACTTTCAACTCAATTATTAGCACACGATAAAGATGAGACACATACTCAAATCGTGATTTCAATTGATGAGCAA
GGAACACTAGGTTATGTCTTTAGCTAA