Detailed information of component protein
Summary
| Component ID | T6CP259586 |
| Component protein type | TssD |
| T6SS ID (Type) | T6SS17506  (Type i1) |
| Strain | Aliivibrio fischeri strain ES401 |
| Replicon | chromosome |
| Sequence | Protein sequence (173 a.a.); Nucleotide sequence (519 bp) |
| Reference |
Experimental investigation has been performed on this T6SSExternal database links
| Locus tag (Gene) | VFES401_RS15835 |
| Coordinate (Strand) | 389226..389744 (-) |
| NCBI ID | WP_012533499.1 |
| RefSeq | NZ_SRJG01000005 |
| Uniprot ID | B5FEE9_ALIFM, A0A510UIA9_ALIFS |
| KEGG ID | vfm:VFMJ11_1495 |
| PDB ID | - |
Pfam domain hit(s)
| Domain | Pfam ID | E-value | Aligned region |
|---|---|---|---|
| T6SS_HCP | PF05638.14 | 1.6e-30 | 6..155 |
Transmembrane helices
- Transmembrane helices are predicted using TMHMM 2.0 software.
| Prediction | Region | Sequence |
|---|---|---|
| Outside | 1-172 | MPTPAYMSIKGETQGDITKDAYSADSVGNVWQEAHVDEFLVQELDHVLTVPRDPQSGQPTGQRVHRPVVVTKQQDRCSPLLFNALVSGEKLPECSINFYRTSTSGKQEHYYTIKLIDALLVDMQTRMAHCQDAAMADRVTEEVLKFTYRAIEVTHETCGTAGNDDWRTPREA |
Signal peptides
- Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
- Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
- Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
| Prediction | Probability | Cleavage site | Signal peptide sequence |
|---|---|---|---|
| Other | 0.9711 | - | - |
Protein sequence: 173 a.a.
>T6CP259586 NZ_SRJG01000005:c389744-389226 [Aliivibrio fischeri] [TssD]
MPTPAYMSIKGETQGDITKDAYSADSVGNVWQEAHVDEFLVQELDHVLTVPRDPQSGQPTGQRVHRPVVVTKQQDRCSPL
LFNALVSGEKLPECSINFYRTSTSGKQEHYYTIKLIDALLVDMQTRMAHCQDAAMADRVTEEVLKFTYRAIEVTHETCGT
AGNDDWRTPREA*
MPTPAYMSIKGETQGDITKDAYSADSVGNVWQEAHVDEFLVQELDHVLTVPRDPQSGQPTGQRVHRPVVVTKQQDRCSPL
LFNALVSGEKLPECSINFYRTSTSGKQEHYYTIKLIDALLVDMQTRMAHCQDAAMADRVTEEVLKFTYRAIEVTHETCGT
AGNDDWRTPREA*
Nucleotide sequence: 519 bp
>T6CP259586 NZ_SRJG01000005:c389744-389226 [Aliivibrio fischeri] [TssD]
ATGCCAACTCCAGCATATATGTCAATTAAAGGTGAAACTCAAGGCGATATTACTAAAGATGCTTATTCAGCAGATTCAGT
TGGTAACGTATGGCAAGAAGCACACGTTGATGAATTCCTTGTTCAAGAACTTGACCATGTTTTAACTGTTCCACGTGATC
CTCAAAGTGGTCAACCAACTGGTCAACGTGTACACCGTCCTGTAGTTGTAACTAAACAACAAGACCGTTGTTCTCCATTA
CTATTCAATGCTCTTGTATCTGGTGAAAAACTGCCTGAATGTAGCATCAACTTCTACCGTACGTCGACTTCAGGTAAGCA
AGAGCATTACTACACAATTAAACTGATTGATGCACTACTAGTTGATATGCAAACTCGCATGGCTCACTGTCAAGATGCTG
CAATGGCTGATCGCGTAACTGAAGAAGTGCTTAAGTTTACTTACCGTGCAATTGAAGTGACTCATGAAACATGTGGTACT
GCAGGTAACGACGACTGGCGTACACCACGCGAAGCGTAA
ATGCCAACTCCAGCATATATGTCAATTAAAGGTGAAACTCAAGGCGATATTACTAAAGATGCTTATTCAGCAGATTCAGT
TGGTAACGTATGGCAAGAAGCACACGTTGATGAATTCCTTGTTCAAGAACTTGACCATGTTTTAACTGTTCCACGTGATC
CTCAAAGTGGTCAACCAACTGGTCAACGTGTACACCGTCCTGTAGTTGTAACTAAACAACAAGACCGTTGTTCTCCATTA
CTATTCAATGCTCTTGTATCTGGTGAAAAACTGCCTGAATGTAGCATCAACTTCTACCGTACGTCGACTTCAGGTAAGCA
AGAGCATTACTACACAATTAAACTGATTGATGCACTACTAGTTGATATGCAAACTCGCATGGCTCACTGTCAAGATGCTG
CAATGGCTGATCGCGTAACTGAAGAAGTGCTTAAGTTTACTTACCGTGCAATTGAAGTGACTCATGAAACATGTGGTACT
GCAGGTAACGACGACTGGCGTACACCACGCGAAGCGTAA