Detailed information of component protein


Summary

Component ID T6CP259585
Component protein type TssI
T6SS ID (Type) T6SS17506 experimental (Type i1)
Strain Aliivibrio fischeri strain ES401
Replicon chromosome
Sequence Protein sequence (693 a.a.); Nucleotide sequence (2079 bp)
Reference
experimental Experimental investigation has been performed on this T6SS
External database links

Locus tag (Gene) VFES401_RS15830
Coordinate (Strand) 387078..389156 (-)
NCBI ID WP_135354018.1
RefSeq NZ_SRJG01000005
Uniprot ID UPI00107E82BD
KEGG ID -
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
Phage_GPD PF05954.13 2.1e-76 27..331
Phage_base_V PF04717.14 2.9e-15 387..455
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Outside 1-692 MVSDIEFKFEVLGTEHEFRVESFNVVEELSKPFHVSLSLLSLDADITFDELIRKPALLSIFGQGVGTARQFHGVVNEVRYLGEGRRFSRYQITLVPQLWFLTQRQDCRIFQEKSVVDIVTEVLDGAAVTDYRFDISALYQTKEYVLQYRESDSHFVQRLLAEHGLWYYFEHTAANHTMVIVDKNDAIAELENTPLNSSYVGPVIYQADGGGNADREHIFDLESINRVRTGHVTHTDYNYEQPRIPQKMESLGLIDTDLAFFDYPGRYIEPSQGLVRADELMAESIVDNYQIEAASNVMRLIPGYSFILDKHPRRGLNRDYTILTVTHSGYDPQVHEDEANEMPTTYQNQFSCLPRDIEFKAPKIAAPVVDGPQTAVVVGPAGEEIYTDKLGRIKVQFHWDRYGQSDEHSSCWIRVSQSMAAPTWGAVYLPRIGHEVVVAFLEGDPDRPLVTGAVYNGLHYPPYSLPENKTRTTFRTQTHKGTGYNELSFEDEANQEEVYIHAQKDMSTKVLNNRYRTIGQDEFLIVERHQTNEVKGDHKETIEGHKTTTVNSTFTETVEQDVTVKYNANETQSVTNNSTLDIGDNRTTSIGKNDDLSVTENSNLSVGASRNSDISSDDNQTVGGNLTVSVQGNTSYKTDGATQIISGSKIVLQTGSSSLVMSSDGTIKLAGNAITIEGSSTVTVKGGKVAVN


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.9945 - -


  Protein sequence: 693 a.a.    

>T6CP259585 NZ_SRJG01000005:c389156-387078 [Aliivibrio fischeri] [TssI]
MVSDIEFKFEVLGTEHEFRVESFNVVEELSKPFHVSLSLLSLDADITFDELIRKPALLSIFGQGVGTARQFHGVVNEVRY
LGEGRRFSRYQITLVPQLWFLTQRQDCRIFQEKSVVDIVTEVLDGAAVTDYRFDISALYQTKEYVLQYRESDSHFVQRLL
AEHGLWYYFEHTAANHTMVIVDKNDAIAELENTPLNSSYVGPVIYQADGGGNADREHIFDLESINRVRTGHVTHTDYNYE
QPRIPQKMESLGLIDTDLAFFDYPGRYIEPSQGLVRADELMAESIVDNYQIEAASNVMRLIPGYSFILDKHPRRGLNRDY
TILTVTHSGYDPQVHEDEANEMPTTYQNQFSCLPRDIEFKAPKIAAPVVDGPQTAVVVGPAGEEIYTDKLGRIKVQFHWD
RYGQSDEHSSCWIRVSQSMAAPTWGAVYLPRIGHEVVVAFLEGDPDRPLVTGAVYNGLHYPPYSLPENKTRTTFRTQTHK
GTGYNELSFEDEANQEEVYIHAQKDMSTKVLNNRYRTIGQDEFLIVERHQTNEVKGDHKETIEGHKTTTVNSTFTETVEQ
DVTVKYNANETQSVTNNSTLDIGDNRTTSIGKNDDLSVTENSNLSVGASRNSDISSDDNQTVGGNLTVSVQGNTSYKTDG
ATQIISGSKIVLQTGSSSLVMSSDGTIKLAGNAITIEGSSTVTVKGGKVAVN*

  Nucleotide sequence: 2079 bp    

>T6CP259585 NZ_SRJG01000005:c389156-387078 [Aliivibrio fischeri] [TssI]
ATGGTTAGCGATATAGAATTTAAGTTTGAAGTTCTTGGCACAGAACACGAATTTCGTGTCGAGAGCTTTAATGTAGTTGA
GGAGCTGTCTAAACCGTTTCATGTCAGCTTATCATTACTTTCACTTGATGCAGATATTACGTTTGATGAATTGATCAGAA
AACCTGCATTATTAAGTATATTTGGTCAAGGTGTTGGAACTGCACGTCAGTTTCATGGTGTCGTGAATGAAGTTCGTTAT
TTAGGTGAAGGACGTCGTTTTTCACGTTATCAAATTACGTTAGTACCGCAGTTGTGGTTTTTAACGCAACGTCAAGATTG
TCGTATTTTCCAAGAAAAATCAGTGGTTGATATTGTTACTGAAGTATTAGATGGTGCAGCAGTAACTGATTATCGATTTG
ATATTTCGGCTTTATATCAGACAAAAGAATACGTTTTACAATATCGAGAAAGTGATAGTCATTTTGTACAGCGTTTGTTG
GCTGAGCACGGCCTATGGTACTACTTTGAACATACAGCAGCTAATCACACAATGGTTATTGTTGATAAAAATGACGCTAT
TGCAGAGTTGGAAAATACTCCGTTAAATTCTTCATATGTTGGCCCTGTTATCTACCAAGCTGATGGTGGTGGCAATGCGG
ATAGAGAACATATCTTTGATTTAGAATCAATTAATCGAGTACGTACCGGCCATGTAACTCATACTGATTATAATTATGAA
CAGCCACGAATTCCTCAAAAAATGGAAAGCTTGGGCCTAATTGATACTGACTTAGCTTTTTTTGATTATCCTGGACGTTA
TATTGAGCCGTCTCAAGGTTTGGTTCGTGCTGATGAGCTGATGGCTGAAAGTATTGTTGATAATTATCAGATTGAAGCTG
CAAGTAATGTAATGCGATTAATTCCGGGCTACAGTTTTATTTTAGATAAACACCCAAGAAGAGGGCTTAATCGAGATTAT
ACAATTTTGACGGTAACGCACAGTGGTTATGATCCTCAAGTTCATGAAGATGAAGCCAATGAAATGCCAACCACATATCA
AAATCAGTTTAGTTGTTTACCGCGTGATATTGAATTTAAGGCACCTAAGATTGCAGCTCCTGTTGTTGATGGCCCGCAAA
CCGCTGTTGTTGTTGGCCCAGCAGGTGAAGAAATTTATACTGATAAGCTTGGGCGTATCAAAGTGCAATTTCATTGGGAT
CGTTATGGCCAAAGTGATGAGCATTCAAGTTGTTGGATCCGTGTTAGTCAGTCAATGGCAGCTCCGACATGGGGCGCTGT
ATATTTACCAAGAATTGGTCATGAAGTAGTCGTTGCTTTTTTAGAGGGGGATCCTGACCGTCCATTAGTTACAGGTGCGG
TATATAACGGGCTTCATTACCCGCCATATTCTTTACCTGAAAATAAAACACGCACAACCTTTAGAACTCAAACTCATAAA
GGAACAGGGTATAACGAGTTAAGCTTTGAAGATGAAGCTAACCAAGAAGAAGTTTATATTCACGCACAAAAAGACATGTC
GACCAAAGTCTTGAATAATCGCTATAGAACTATTGGTCAAGATGAGTTTTTAATTGTCGAACGTCATCAAACAAATGAAG
TGAAAGGCGATCACAAAGAAACGATTGAAGGACATAAAACAACAACGGTTAATAGTACGTTTACTGAAACGGTCGAACAA
GATGTAACGGTTAAATACAATGCAAATGAAACGCAATCAGTAACCAATAATTCAACATTAGATATTGGTGACAACCGTAC
AACAAGTATTGGTAAAAATGATGACTTGAGCGTAACAGAAAATAGTAATTTGTCGGTTGGGGCATCTCGTAATAGTGATA
TTTCTTCCGATGATAATCAAACCGTTGGAGGAAATTTAACGGTTTCTGTCCAAGGAAATACATCTTATAAGACCGATGGC
GCAACGCAAATTATTAGTGGCAGTAAAATTGTATTGCAAACAGGAAGTTCTTCTTTAGTCATGAGCAGTGACGGCACTAT
TAAATTAGCAGGTAATGCGATTACTATTGAAGGTTCAAGTACCGTAACAGTGAAAGGTGGTAAGGTTGCAGTTAACTAA