Detailed information of component protein


Summary

Component ID T6CP259584
Component protein type TssA
T6SS ID (Type) T6SS17506 experimental (Type i1)
Strain Aliivibrio fischeri strain ES401
Replicon chromosome
Sequence Protein sequence (520 a.a.); Nucleotide sequence (1560 bp)
Reference
experimental Experimental investigation has been performed on this T6SS
External database links

Locus tag (Gene) VFES401_RS15800
Coordinate (Strand) 379664..381223 (-)
NCBI ID WP_135354014.1
RefSeq NZ_SRJG01000005
Uniprot ID UPI00107E7B6B
KEGG ID -
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
T6SS_VasJ PF16989.7 1e-63 239..487
ImpA_N PF06812.14 6.3e-24 10..120
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Outside 1-519 MTSLNVELLLKPISEASPTGEESKYEFCYELMELEIKKFGSLFGETVDWKVVETNAIEVLTTYSKDLKAICYLIRALIERNGFEGLEEGLNLLKQNLVLFGTDLYPQRKRARDGAMEWFVAQLETVLPKLDSSTTNWENVTSYLQKINEISDQYYEVFPDSEVEFYLITSVLNGISQRVVGAGETNTDTSRNTVCEPEPLVEEITSTVTEVKTPVQAVTQAPRTVNTVNQEVDIDTDFTSPSASKRTLKKVAEFMLHSDISTPLAYRLHRNCTWCEVDELPPHDNDKKTPLSLAVSQDQLSEYRDKAKQETEAEVIKRLERTLTDAPFWLTGHYLMFQMLTNLDHHEAAEAVKQETQHFISQLEGIELLTFANSIPFADEDTLKWLSSNTASVPVAVASVSVDYTEDDSLVEGEVTLENLGEYVSRIAQNLASDPSGRGQWMLHYKLVKAYRFVGLLPLCLPYIEKMWSIKEEINLSNWEPHLCNQLDLLVNEVLSEMYPIKEHMPEKYQQWLSINNTN


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.9747 - -


  Protein sequence: 520 a.a.    

>T6CP259584 NZ_SRJG01000005:c381223-379664 [Aliivibrio fischeri] [TssA]
MTSLNVELLLKPISEASPTGEESKYEFCYELMELEIKKFGSLFGETVDWKVVETNAIEVLTTYSKDLKAICYLIRALIER
NGFEGLEEGLNLLKQNLVLFGTDLYPQRKRARDGAMEWFVAQLETVLPKLDSSTTNWENVTSYLQKINEISDQYYEVFPD
SEVEFYLITSVLNGISQRVVGAGETNTDTSRNTVCEPEPLVEEITSTVTEVKTPVQAVTQAPRTVNTVNQEVDIDTDFTS
PSASKRTLKKVAEFMLHSDISTPLAYRLHRNCTWCEVDELPPHDNDKKTPLSLAVSQDQLSEYRDKAKQETEAEVIKRLE
RTLTDAPFWLTGHYLMFQMLTNLDHHEAAEAVKQETQHFISQLEGIELLTFANSIPFADEDTLKWLSSNTASVPVAVASV
SVDYTEDDSLVEGEVTLENLGEYVSRIAQNLASDPSGRGQWMLHYKLVKAYRFVGLLPLCLPYIEKMWSIKEEINLSNWE
PHLCNQLDLLVNEVLSEMYPIKEHMPEKYQQWLSINNTN*

  Nucleotide sequence: 1560 bp    

>T6CP259584 NZ_SRJG01000005:c381223-379664 [Aliivibrio fischeri] [TssA]
ATGACAAGTTTGAATGTTGAACTGTTATTGAAACCGATATCTGAAGCTTCGCCTACTGGTGAAGAATCAAAGTACGAGTT
TTGTTATGAATTAATGGAACTGGAAATTAAAAAGTTTGGTTCTTTGTTTGGTGAAACCGTCGATTGGAAAGTGGTAGAGA
CAAATGCTATTGAAGTATTGACCACTTATAGTAAAGATTTAAAAGCTATTTGCTACTTGATTCGAGCATTAATTGAGCGC
AATGGATTTGAAGGTTTAGAGGAAGGACTGAATCTGCTAAAGCAAAATTTAGTTTTGTTTGGCACTGATTTATATCCACA
AAGAAAGCGTGCTCGTGATGGTGCAATGGAATGGTTTGTTGCGCAATTAGAAACAGTACTTCCAAAACTCGATAGTTCGA
CGACTAATTGGGAGAATGTTACTTCATATTTGCAAAAAATTAATGAAATTAGCGATCAATATTATGAAGTATTTCCAGAT
TCTGAAGTTGAATTCTATTTGATCACATCTGTATTAAATGGAATATCACAACGAGTTGTTGGTGCAGGTGAAACCAATAC
AGACACTTCAAGAAATACGGTGTGTGAACCTGAACCACTTGTAGAAGAAATAACATCGACGGTTACTGAAGTTAAAACAC
CAGTACAAGCAGTTACTCAAGCTCCTAGAACGGTTAATACAGTTAATCAAGAAGTAGATATTGATACGGATTTTACTTCT
CCAAGTGCTTCTAAACGAACCTTAAAAAAGGTTGCTGAGTTTATGTTGCATTCTGATATATCAACGCCATTAGCTTATCG
ATTACACCGTAACTGTACATGGTGCGAAGTGGATGAATTACCTCCACATGATAATGATAAAAAAACACCACTAAGCCTTG
CGGTATCGCAAGATCAGTTAAGCGAATATAGAGATAAAGCCAAACAAGAAACAGAAGCAGAGGTGATTAAGCGTTTAGAA
AGAACGTTAACCGATGCACCATTTTGGTTAACTGGCCACTATTTGATGTTTCAAATGCTTACTAATTTGGATCATCACGA
AGCAGCAGAAGCAGTTAAACAAGAGACTCAGCACTTTATTTCTCAACTTGAGGGCATTGAATTATTAACTTTTGCCAATT
CAATACCATTTGCTGATGAAGATACATTGAAATGGCTTTCTTCGAACACAGCGAGTGTACCCGTAGCCGTTGCTTCTGTA
TCTGTTGACTACACAGAAGACGATAGCTTAGTTGAGGGTGAAGTAACGTTAGAAAATTTAGGGGAGTACGTATCACGTAT
TGCTCAAAACTTGGCTAGTGATCCATCAGGACGAGGCCAATGGATGCTCCATTATAAATTAGTTAAGGCGTACCGCTTTG
TTGGCTTATTACCTCTTTGTTTACCATATATTGAAAAAATGTGGTCGATTAAGGAAGAAATAAATCTTAGCAATTGGGAA
CCTCATTTATGTAATCAGCTTGACTTGTTGGTGAACGAAGTCTTATCAGAAATGTATCCCATAAAAGAGCACATGCCTGA
AAAGTACCAACAGTGGCTATCAATTAATAATACCAACTAG