Detailed information of component protein
Summary
| Component ID | T6CP259583 |
| Component protein type | TssB |
| T6SS ID (Type) | T6SS17506  (Type i1) |
| Strain | Aliivibrio fischeri strain ES401 |
| Replicon | chromosome |
| Sequence | Protein sequence (170 a.a.); Nucleotide sequence (510 bp) |
| Reference |
Experimental investigation has been performed on this T6SSExternal database links
| Locus tag (Gene) | VFES401_RS15795 |
| Coordinate (Strand) | 379096..379605 (-) |
| NCBI ID | WP_012535409.1 |
| RefSeq | NZ_SRJG01000005 |
| Uniprot ID | B5EUK4_ALIFM, A0A1B9P6L9_ALIFS |
| KEGG ID | vfm:VFMJ11_A0823 |
| PDB ID | - |
Pfam domain hit(s)
| Domain | Pfam ID | E-value | Aligned region |
|---|---|---|---|
| T6SS_VipA | PF05591.14 | 9.3e-59 | 6..157 |
Transmembrane helices
- Transmembrane helices are predicted using TMHMM 2.0 software.
| Prediction | Region | Sequence |
|---|---|---|
| Outside | 1-169 | MSRDGSVAPKERINIRYVPATGDVQEDVELPLSMMVVGDFTARTDETPIEDRTPINIDKDNFNDVMEGYSPNVKVNVDNKLSDEEGAQLGVDLTFNSMKDFSPEAIAKSVPELNGLLELREALVALKGPLGNVPAFRKKIAAVLQDEEARQKLLEELNIGSAKEEAKAE |
Signal peptides
- Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
- Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
- Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
| Prediction | Probability | Cleavage site | Signal peptide sequence |
|---|---|---|---|
| Other | 0.9879 | - | - |
Protein sequence: 170 a.a.
>T6CP259583 NZ_SRJG01000005:c379605-379096 [Aliivibrio fischeri] [TssB]
MSRDGSVAPKERINIRYVPATGDVQEDVELPLSMMVVGDFTARTDETPIEDRTPINIDKDNFNDVMEGYSPNVKVNVDNK
LSDEEGAQLGVDLTFNSMKDFSPEAIAKSVPELNGLLELREALVALKGPLGNVPAFRKKIAAVLQDEEARQKLLEELNIG
SAKEEAKAE*
MSRDGSVAPKERINIRYVPATGDVQEDVELPLSMMVVGDFTARTDETPIEDRTPINIDKDNFNDVMEGYSPNVKVNVDNK
LSDEEGAQLGVDLTFNSMKDFSPEAIAKSVPELNGLLELREALVALKGPLGNVPAFRKKIAAVLQDEEARQKLLEELNIG
SAKEEAKAE*
Nucleotide sequence: 510 bp
>T6CP259583 NZ_SRJG01000005:c379605-379096 [Aliivibrio fischeri] [TssB]
ATGTCACGCGATGGCTCGGTTGCTCCTAAAGAGCGAATTAATATCCGTTATGTTCCTGCAACAGGGGATGTACAAGAAGA
CGTTGAACTACCATTAAGTATGATGGTTGTTGGTGATTTTACAGCTCGTACTGATGAGACTCCAATTGAAGACCGTACTC
CTATTAATATCGATAAAGATAACTTTAATGATGTTATGGAAGGTTATTCTCCGAACGTTAAAGTGAATGTCGATAACAAA
CTTAGCGATGAAGAAGGCGCACAGTTAGGCGTTGATTTAACGTTTAACAGCATGAAAGATTTTTCGCCAGAAGCTATCGC
AAAAAGTGTACCAGAGCTGAATGGTCTACTTGAATTACGTGAAGCGTTAGTTGCTTTAAAAGGTCCATTAGGTAACGTTC
CTGCATTCCGTAAAAAGATTGCAGCAGTACTTCAAGATGAAGAAGCACGACAAAAATTATTAGAAGAGCTAAATATTGGT
TCGGCTAAAGAAGAAGCTAAGGCTGAATAG
ATGTCACGCGATGGCTCGGTTGCTCCTAAAGAGCGAATTAATATCCGTTATGTTCCTGCAACAGGGGATGTACAAGAAGA
CGTTGAACTACCATTAAGTATGATGGTTGTTGGTGATTTTACAGCTCGTACTGATGAGACTCCAATTGAAGACCGTACTC
CTATTAATATCGATAAAGATAACTTTAATGATGTTATGGAAGGTTATTCTCCGAACGTTAAAGTGAATGTCGATAACAAA
CTTAGCGATGAAGAAGGCGCACAGTTAGGCGTTGATTTAACGTTTAACAGCATGAAAGATTTTTCGCCAGAAGCTATCGC
AAAAAGTGTACCAGAGCTGAATGGTCTACTTGAATTACGTGAAGCGTTAGTTGCTTTAAAAGGTCCATTAGGTAACGTTC
CTGCATTCCGTAAAAAGATTGCAGCAGTACTTCAAGATGAAGAAGCACGACAAAAATTATTAGAAGAGCTAAATATTGGT
TCGGCTAAAGAAGAAGCTAAGGCTGAATAG