Detailed information of component protein


Summary

Component ID T6CP259582
Component protein type TssC
T6SS ID (Type) T6SS17506 experimental (Type i1)
Strain Aliivibrio fischeri strain ES401
Replicon chromosome
Sequence Protein sequence (493 a.a.); Nucleotide sequence (1479 bp)
Reference
experimental Experimental investigation has been performed on this T6SS
External database links

Locus tag (Gene) VFES401_RS15790
Coordinate (Strand) 377609..379087 (-)
NCBI ID WP_063645634.1
RefSeq NZ_SRJG01000005
Uniprot ID UPI0007C45ADB
KEGG ID -
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
VipB PF05943.14 8.5e-126 68..365
VipB_2 PF18945.2 1.1e-44 378..489
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Outside 1-492 MTAEAQAPEQEAALVESGSLLDSILNETRLKPSDEGFDVAKRGVEAFIGELLSTNTSDKVDQSLVDLMISEIDQKLSKQVDAILHNKEVQAIESTWRGLKYLVDHTDFRENIQIELISAKKDEVLDDFEDAPEVVKSGLYKQIYTREYGQFGGKPVGAVICDFQMSASSPDIKLMEYMANVGAMSHAPFITSASAKFFGLDSYEELPNLKDLKSVFEGPQYTKWRGFREHEDARYVGLCTSRMMLRTPYSVEDNPIKAFDYNEHVKDGHDNYLWGNSAYAMASKISESFAKYRWCPNIIGPQSGGTVSDLPVYNYESMGQIETKIPTEILISDRREYELAEEGFIALTMRKGSDNAAFFSANSVQKAKVFPNTPEGQQAEMNYKLGIQLPYMFIINRLAHYIKVLQREQIGSWKERSDLEIELNKWIRQYVSDQENPPAEVRGRRPLRAAKVEVSEVEGDPGWYKVSMSVRPHFKYMGASFDLSLVGKLDQN


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.9889 - -


  Protein sequence: 493 a.a.    

>T6CP259582 NZ_SRJG01000005:c379087-377609 [Aliivibrio fischeri] [TssC]
MTAEAQAPEQEAALVESGSLLDSILNETRLKPSDEGFDVAKRGVEAFIGELLSTNTSDKVDQSLVDLMISEIDQKLSKQV
DAILHNKEVQAIESTWRGLKYLVDHTDFRENIQIELISAKKDEVLDDFEDAPEVVKSGLYKQIYTREYGQFGGKPVGAVI
CDFQMSASSPDIKLMEYMANVGAMSHAPFITSASAKFFGLDSYEELPNLKDLKSVFEGPQYTKWRGFREHEDARYVGLCT
SRMMLRTPYSVEDNPIKAFDYNEHVKDGHDNYLWGNSAYAMASKISESFAKYRWCPNIIGPQSGGTVSDLPVYNYESMGQ
IETKIPTEILISDRREYELAEEGFIALTMRKGSDNAAFFSANSVQKAKVFPNTPEGQQAEMNYKLGIQLPYMFIINRLAH
YIKVLQREQIGSWKERSDLEIELNKWIRQYVSDQENPPAEVRGRRPLRAAKVEVSEVEGDPGWYKVSMSVRPHFKYMGAS
FDLSLVGKLDQN*

  Nucleotide sequence: 1479 bp    

>T6CP259582 NZ_SRJG01000005:c379087-377609 [Aliivibrio fischeri] [TssC]
ATGACAGCAGAAGCACAAGCTCCAGAGCAAGAAGCAGCACTCGTTGAGTCTGGTTCATTACTAGATAGTATTCTTAATGA
AACTCGTTTAAAACCAAGTGATGAAGGTTTTGATGTCGCTAAGCGCGGCGTAGAAGCGTTTATTGGTGAGTTACTAAGTA
CAAATACATCAGATAAAGTTGATCAGTCGCTAGTTGATTTGATGATTTCTGAAATCGATCAGAAACTATCAAAACAAGTT
GATGCAATTTTGCATAACAAAGAAGTACAAGCTATTGAATCAACATGGCGTGGTCTAAAGTACTTGGTCGATCATACTGA
CTTCCGTGAAAACATTCAGATTGAATTGATTTCAGCGAAGAAAGACGAAGTATTAGATGATTTTGAAGATGCTCCAGAAG
TTGTTAAATCGGGCCTTTATAAGCAAATTTATACTCGTGAATACGGTCAATTTGGTGGTAAACCTGTTGGCGCGGTTATC
TGTGATTTCCAAATGTCAGCGTCATCTCCTGATATTAAACTAATGGAATACATGGCTAATGTTGGTGCAATGTCACATGC
CCCATTTATTACATCAGCGTCGGCTAAATTCTTTGGGCTAGATAGCTATGAAGAATTACCAAATTTAAAAGATCTTAAGT
CAGTATTTGAAGGTCCACAATACACGAAATGGCGTGGGTTCCGTGAACATGAAGATGCACGTTATGTTGGTCTTTGTACT
TCACGTATGATGCTTCGTACTCCTTACTCAGTAGAAGATAATCCAATCAAAGCATTTGATTATAATGAACACGTAAAAGA
TGGCCATGATAACTACTTATGGGGTAACTCAGCTTACGCAATGGCATCTAAGATCAGTGAATCTTTTGCTAAGTATCGTT
GGTGTCCAAATATCATTGGTCCACAAAGTGGTGGTACAGTATCTGATCTTCCAGTATATAACTACGAGTCAATGGGACAA
ATTGAAACTAAGATCCCAACAGAGATCTTAATTTCTGATCGTCGTGAATACGAGCTAGCAGAAGAGGGCTTTATTGCGCT
TACTATGCGTAAAGGTTCTGATAATGCAGCATTCTTCTCTGCAAACTCGGTACAAAAAGCAAAAGTATTCCCGAATACGC
CAGAAGGTCAGCAAGCTGAAATGAACTACAAATTAGGTATTCAATTACCTTATATGTTCATTATTAACCGTTTAGCACAT
TACATTAAAGTACTTCAACGTGAACAGATTGGTTCATGGAAAGAGCGTTCTGACTTAGAAATCGAGCTAAACAAATGGAT
CCGTCAATACGTTTCTGATCAAGAGAATCCACCAGCAGAAGTACGTGGTCGCCGACCTTTACGTGCTGCAAAAGTCGAAG
TATCTGAAGTTGAAGGCGATCCAGGTTGGTACAAAGTATCAATGTCAGTTCGTCCACACTTTAAGTACATGGGTGCAAGT
TTTGATTTATCTTTAGTTGGAAAATTAGATCAAAACTAA