Detailed information of component protein


Summary

Component ID T6CP259580
Component protein type TssF
T6SS ID (Type) T6SS17506 experimental (Type i1)
Strain Aliivibrio fischeri strain ES401
Replicon chromosome
Sequence Protein sequence (583 a.a.); Nucleotide sequence (1749 bp)
Reference
experimental Experimental investigation has been performed on this T6SS
External database links

Locus tag (Gene) VFES401_RS15780
Coordinate (Strand) 375378..377126 (-)
NCBI ID WP_135354013.1
RefSeq NZ_SRJG01000005
Uniprot ID UPI00107E9E70
KEGG ID -
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
T6SS_TssF PF05947.14 2.4e-161 5..579
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Outside 1-582 VSNSKYFQDELTYLKEAGSEFAKYHPKLTHFLSEGTFDPDVERLLEGFAFLTGRVREKIDDELPELTQSLISLLWPHYMRSVPSMCISELVPHSGSVTEKIIVERGAEMASEQVEGTQCQFRTCYDVALYPLSIQQIEQNNSRTNSSLHLTIAANNGLELSRIKLDTLRFHLHGEQHITRSLYLWFFRYLEYVELDVGGGYKHRLRADQVVPVGFGDDEGILPYSKNSFSGYRLLQEYFSLPDKFMFFDLKGLEWLSGIPQRSTVKISFAFSRALPSEVIVKNKHFKLHCTPSVNLFEKDGDPIRLDHQLNEYKVRPQSANQEHYEVYSVESVESWSKAERCRKKLIEFESFEHQINQRDKRDFYKTKVSERVNGRGLERYVSFHSHNNQVSELGSETVLMKLVCSNADLAERLSVGDIIYTTHKSPTYATFTNITKPTQSVSPQVNGELQWQLIANMSLNYLSLANIDVLKVLLSTYDYQSRVDRQAHRASIHRLDGIKSATMSPTDRVFRGVAIRGVKFKVGMNSSYFVNEGDMYLLASILNEFIRLYSSINSFTELEVIDEHTGEMYDWPSLSGQQTIL


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.9954 - -


  Protein sequence: 583 a.a.    

>T6CP259580 NZ_SRJG01000005:c377126-375378 [Aliivibrio fischeri] [TssF]
VSNSKYFQDELTYLKEAGSEFAKYHPKLTHFLSEGTFDPDVERLLEGFAFLTGRVREKIDDELPELTQSLISLLWPHYMR
SVPSMCISELVPHSGSVTEKIIVERGAEMASEQVEGTQCQFRTCYDVALYPLSIQQIEQNNSRTNSSLHLTIAANNGLEL
SRIKLDTLRFHLHGEQHITRSLYLWFFRYLEYVELDVGGGYKHRLRADQVVPVGFGDDEGILPYSKNSFSGYRLLQEYFS
LPDKFMFFDLKGLEWLSGIPQRSTVKISFAFSRALPSEVIVKNKHFKLHCTPSVNLFEKDGDPIRLDHQLNEYKVRPQSA
NQEHYEVYSVESVESWSKAERCRKKLIEFESFEHQINQRDKRDFYKTKVSERVNGRGLERYVSFHSHNNQVSELGSETVL
MKLVCSNADLAERLSVGDIIYTTHKSPTYATFTNITKPTQSVSPQVNGELQWQLIANMSLNYLSLANIDVLKVLLSTYDY
QSRVDRQAHRASIHRLDGIKSATMSPTDRVFRGVAIRGVKFKVGMNSSYFVNEGDMYLLASILNEFIRLYSSINSFTELE
VIDEHTGEMYDWPSLSGQQTIL*

  Nucleotide sequence: 1749 bp    

>T6CP259580 NZ_SRJG01000005:c377126-375378 [Aliivibrio fischeri] [TssF]
GTGAGCAATAGCAAATATTTTCAAGATGAGCTTACTTATCTAAAAGAAGCGGGCAGTGAATTCGCAAAATATCACCCTAA
ACTGACGCACTTTTTATCTGAAGGTACATTTGATCCTGATGTTGAACGCTTATTAGAAGGCTTTGCTTTTTTAACTGGTC
GTGTTCGTGAAAAAATTGATGATGAATTGCCAGAATTAACCCAATCACTTATTTCTCTTCTTTGGCCACATTACATGCGA
TCTGTGCCTTCAATGTGCATTAGTGAATTGGTTCCTCATTCAGGTAGTGTGACTGAAAAAATTATTGTTGAACGTGGTGC
AGAGATGGCAAGTGAGCAAGTGGAAGGGACTCAATGTCAGTTTCGAACTTGCTATGATGTTGCTTTATACCCGTTATCTA
TTCAACAAATAGAGCAGAACAACAGTAGAACTAACTCATCTCTACATTTGACGATTGCAGCGAACAATGGTTTAGAGCTA
TCAAGAATTAAATTAGATACATTACGATTTCACTTACATGGTGAGCAGCATATTACACGTAGCTTATATTTATGGTTTTT
TCGTTATTTAGAATATGTTGAATTAGATGTTGGTGGTGGATATAAGCACCGTTTGCGTGCAGACCAAGTCGTTCCTGTTG
GTTTTGGAGATGACGAAGGGATATTGCCATACAGTAAAAACTCTTTCTCAGGATATCGCTTACTGCAAGAATATTTTTCC
TTGCCTGATAAATTTATGTTTTTTGATTTAAAAGGACTTGAATGGTTAAGTGGTATCCCGCAAAGAAGTACAGTTAAGAT
CTCTTTTGCGTTTTCTAGAGCACTTCCGTCAGAAGTTATTGTTAAAAATAAACATTTTAAATTACATTGTACGCCTAGTG
TTAATTTATTTGAAAAAGATGGTGACCCTATTCGACTCGATCATCAACTAAATGAATACAAAGTGCGCCCACAAAGCGCA
AATCAAGAGCATTACGAAGTGTATTCTGTTGAGAGTGTTGAAAGCTGGAGTAAGGCAGAGCGTTGTCGTAAGAAATTAAT
TGAATTTGAATCTTTCGAGCATCAAATAAATCAAAGAGACAAGCGTGATTTTTATAAAACAAAAGTTAGTGAGCGCGTTA
ATGGGCGAGGGTTAGAGCGTTATGTTTCATTTCATTCACATAATAATCAAGTTTCTGAACTAGGATCAGAAACAGTATTA
ATGAAGTTAGTGTGTAGCAATGCTGACTTGGCAGAGCGTTTATCTGTTGGCGATATTATTTATACAACACACAAATCACC
GACTTATGCGACGTTTACAAATATAACGAAACCTACTCAATCCGTTAGCCCACAAGTTAATGGTGAACTTCAATGGCAGT
TGATTGCAAACATGTCTCTCAACTACTTATCATTAGCGAATATTGACGTACTCAAGGTTTTATTATCAACCTATGACTAT
CAATCGCGTGTAGATAGGCAAGCACATAGAGCTTCAATTCATCGTTTAGACGGTATTAAATCGGCCACGATGTCACCTAC
AGATCGTGTATTTAGAGGTGTTGCGATTCGAGGTGTGAAATTTAAAGTGGGAATGAATTCATCTTATTTTGTTAATGAAG
GGGATATGTATTTACTTGCGAGTATTTTAAATGAATTTATTCGTTTGTATTCCAGCATAAACTCATTTACTGAACTTGAA
GTGATAGATGAACATACTGGGGAAATGTATGACTGGCCAAGTTTAAGTGGGCAGCAAACTATATTATGA