Detailed information of component protein


Summary

Component ID T6CP259579
Component protein type TssG
T6SS ID (Type) T6SS17506 experimental (Type i1)
Strain Aliivibrio fischeri strain ES401
Replicon chromosome
Sequence Protein sequence (333 a.a.); Nucleotide sequence (999 bp)
Reference
experimental Experimental investigation has been performed on this T6SS
External database links

Locus tag (Gene) VFES401_RS15775
Coordinate (Strand) 374383..375381 (-)
NCBI ID WP_063647519.1
RefSeq NZ_SRJG01000005
Uniprot ID UPI0007C5310C
KEGG ID -
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
T6SS_TssG PF06996.13 2.1e-85 9..317
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Outside 1-332 MIQYIVNKPCDYSFFQAVSLLEKHYQNLPGIEYKAIGENQYVKNEYIQFSVSPKLSFPKSDIEFISEFERNDAVYTQIEVNFMGLHGVSSPLPASYTEKLAGRDPDDNPVKEFFDFFHHRYISMLYRVWKKYRYHIQYKSDAKDPFSGRLLHLVGLSSVIQESSEVDLDRAKLLSYVNQLSTRTRSPKLVSGIVSHYFSLSNVYIEEWVYRRITIAASQRNCLNRKNCQLGGDFHLGQSMADLTGKFNLCIDDIDFDTYVKFLPGGALHETLIGLMKFILCDPMAWDLKLTVRNKSLPINQLGDGLGNELGQTFWLGTTKGEETKIKIVGSN


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.9955 - -


  Protein sequence: 333 a.a.    

>T6CP259579 NZ_SRJG01000005:c375381-374383 [Aliivibrio fischeri] [TssG]
MIQYIVNKPCDYSFFQAVSLLEKHYQNLPGIEYKAIGENQYVKNEYIQFSVSPKLSFPKSDIEFISEFERNDAVYTQIEV
NFMGLHGVSSPLPASYTEKLAGRDPDDNPVKEFFDFFHHRYISMLYRVWKKYRYHIQYKSDAKDPFSGRLLHLVGLSSVI
QESSEVDLDRAKLLSYVNQLSTRTRSPKLVSGIVSHYFSLSNVYIEEWVYRRITIAASQRNCLNRKNCQLGGDFHLGQSM
ADLTGKFNLCIDDIDFDTYVKFLPGGALHETLIGLMKFILCDPMAWDLKLTVRNKSLPINQLGDGLGNELGQTFWLGTTK
GEETKIKIVGSN*

  Nucleotide sequence: 999 bp    

>T6CP259579 NZ_SRJG01000005:c375381-374383 [Aliivibrio fischeri] [TssG]
ATGATTCAATATATTGTTAACAAACCATGCGATTATAGTTTTTTTCAAGCGGTGTCTTTACTTGAAAAACACTATCAAAA
TTTACCTGGTATTGAATATAAAGCTATTGGTGAGAACCAATACGTAAAGAATGAGTACATTCAATTTAGCGTATCTCCAA
AACTTAGCTTCCCTAAAAGTGATATAGAATTTATTTCTGAATTTGAACGTAACGATGCTGTCTATACACAAATAGAAGTT
AACTTTATGGGACTTCACGGTGTAAGTTCACCATTACCAGCTTCGTATACGGAAAAATTAGCAGGAAGAGATCCTGATGA
TAACCCAGTAAAAGAGTTTTTTGATTTTTTCCATCACAGATACATCAGTATGCTTTATCGAGTATGGAAAAAATATCGGT
ATCATATTCAATATAAGAGTGATGCTAAGGATCCGTTCTCAGGTAGGTTATTACATTTAGTTGGATTATCTAGCGTAATT
CAAGAAAGTAGTGAGGTCGATTTAGACAGAGCGAAATTACTTTCCTATGTTAATCAACTTTCGACGCGTACACGTTCACC
AAAACTTGTTTCTGGTATCGTTTCCCATTACTTTTCGCTTTCAAATGTATACATAGAAGAATGGGTATACAGACGAATTA
CTATTGCGGCTTCTCAACGTAATTGTCTTAATCGAAAGAATTGTCAATTGGGTGGTGACTTCCATTTAGGACAGAGTATG
GCGGATTTAACCGGCAAGTTTAATCTGTGTATTGATGATATTGATTTCGATACCTATGTGAAATTTTTGCCTGGTGGTGC
GTTACATGAAACGTTAATCGGACTAATGAAGTTTATTTTATGTGATCCGATGGCGTGGGATTTAAAACTAACTGTACGAA
ATAAGTCTTTACCTATAAATCAATTAGGTGATGGCTTAGGAAATGAGCTTGGACAAACATTTTGGTTAGGAACGACAAAA
GGGGAGGAGACGAAAATTAAAATAGTAGGCAGTAACTAA