Detailed information of component protein


Summary

Component ID T6CP259577
Component protein type TssA
T6SS ID (Type) T6SS17506 experimental (Type i1)
Strain Aliivibrio fischeri strain ES401
Replicon chromosome
Sequence Protein sequence (436 a.a.); Nucleotide sequence (1308 bp)
Reference
experimental Experimental investigation has been performed on this T6SS
External database links

Locus tag (Gene) VFES401_RS15760
Coordinate (Strand) 369086..370393 (+)
NCBI ID WP_063659069.1
RefSeq NZ_SRJG01000005
Uniprot ID UPI0007C54019
KEGG ID -
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
ImpA_N PF06812.14 1.3e-23 9..119
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Outside 1-234 MNLSDFARRPISKETPSGINPNSLDNFSEIKREVNKLNTVTSKISWKNVFKLSKNILETESKDIRCACYYTVSATHIDGLKGLVNGLNSLLDICVIYWHSGYPDVNKTTARMGAFEWLTEHVIKKQKTLKVSPTDLVLIETGHKLTLKIEEELRSHYGNKSPSLGAIRRIFSQWIEEIQTTNLTLEEQRLKKEAIEKQSNSGINVNVSLPPRDDGKKAVQVQSISHAEKDKNIK
Transmembrane helix 235-257 PIVTISLAFIFILTLLFGHFFYA
Inside 258-435 DNQKSTLLINIQKSDLTTINPLISQLENKDDAVKQYVKTALIEQALHLNKNWEITSTKVNKINELATLNHNLKNLYPDSAAVKKLEHEFNQQRANFENEYSDIHRRFLKSRTIFANAKNHNSDENIVKAYSYSNSLFPLLGRIEYAEKQNSLEELNRTQYLLNVYQHKLNTIRKNIQQ


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.9764 - -


  Protein sequence: 436 a.a.    

>T6CP259577 NZ_SRJG01000005:369086-370393 [Aliivibrio fischeri] [TssA]
MNLSDFARRPISKETPSGINPNSLDNFSEIKREVNKLNTVTSKISWKNVFKLSKNILETESKDIRCACYYTVSATHIDGL
KGLVNGLNSLLDICVIYWHSGYPDVNKTTARMGAFEWLTEHVIKKQKTLKVSPTDLVLIETGHKLTLKIEEELRSHYGNK
SPSLGAIRRIFSQWIEEIQTTNLTLEEQRLKKEAIEKQSNSGINVNVSLPPRDDGKKAVQVQSISHAEKDKNIKPIVTIS
LAFIFILTLLFGHFFYADNQKSTLLINIQKSDLTTINPLISQLENKDDAVKQYVKTALIEQALHLNKNWEITSTKVNKIN
ELATLNHNLKNLYPDSAAVKKLEHEFNQQRANFENEYSDIHRRFLKSRTIFANAKNHNSDENIVKAYSYSNSLFPLLGRI
EYAEKQNSLEELNRTQYLLNVYQHKLNTIRKNIQQ*

  Nucleotide sequence: 1308 bp    

>T6CP259577 NZ_SRJG01000005:369086-370393 [Aliivibrio fischeri] [TssA]
ATGAATCTTTCTGATTTTGCGCGACGTCCTATATCTAAAGAAACTCCTTCAGGTATAAACCCTAACTCATTGGATAATTT
TTCTGAAATTAAACGTGAAGTTAACAAATTGAATACGGTTACTTCTAAGATATCTTGGAAAAATGTTTTCAAACTATCAA
AAAACATTTTAGAAACAGAAAGTAAAGATATTAGATGTGCTTGTTATTATACTGTTTCAGCAACCCATATTGATGGATTA
AAAGGGTTAGTTAACGGTTTAAACTCTTTATTAGATATCTGCGTTATTTATTGGCATTCAGGATACCCTGATGTAAATAA
AACTACAGCTCGAATGGGTGCATTTGAGTGGTTAACTGAACATGTCATAAAAAAGCAGAAAACATTAAAAGTATCCCCTA
CTGATCTAGTACTTATCGAAACTGGGCACAAATTAACATTAAAAATAGAAGAAGAACTCCGTTCTCATTATGGCAATAAA
AGCCCTTCACTTGGAGCGATTAGACGTATATTTTCTCAGTGGATTGAAGAAATCCAAACAACAAATTTGACCTTAGAAGA
ACAACGTCTCAAAAAAGAAGCTATAGAAAAACAAAGCAATTCAGGTATTAACGTTAATGTTTCTCTCCCACCAAGAGATG
ATGGTAAAAAGGCGGTTCAGGTTCAGTCTATTAGTCATGCCGAAAAAGATAAAAATATAAAGCCAATTGTAACAATTTCG
CTGGCGTTTATCTTTATCTTGACATTATTGTTCGGGCACTTTTTCTACGCTGACAATCAGAAAAGTACGTTACTTATTAA
TATCCAAAAATCAGACTTAACAACCATTAATCCTTTGATATCTCAACTAGAAAATAAAGATGATGCTGTTAAACAATACG
TAAAGACTGCACTAATAGAACAAGCTTTACATTTAAATAAAAACTGGGAAATCACCTCAACAAAAGTCAATAAAATTAAT
GAATTAGCTACGTTAAATCACAATTTAAAAAATTTATACCCTGACTCTGCAGCTGTCAAAAAATTAGAACATGAATTCAA
TCAGCAGCGTGCTAATTTTGAAAATGAATACAGTGATATTCATCGACGTTTTCTTAAATCAAGGACGATATTTGCCAATG
CAAAAAATCATAATTCAGACGAAAATATTGTTAAAGCATACAGTTACAGTAATTCACTCTTCCCTTTATTAGGAAGAATT
GAATACGCTGAAAAACAAAACTCATTAGAAGAGCTAAATCGCACTCAATATTTACTTAATGTTTATCAACACAAATTGAA
TACAATACGAAAAAACATTCAGCAGTAA