Detailed information of component protein


Summary

Component ID T6CP259574
Component protein type TssK
T6SS ID (Type) T6SS17506 experimental (Type i1)
Strain Aliivibrio fischeri strain ES401
Replicon chromosome
Sequence Protein sequence (442 a.a.); Nucleotide sequence (1326 bp)
Reference
experimental Experimental investigation has been performed on this T6SS
External database links

Locus tag (Gene) VFES401_RS15695
Coordinate (Strand) 345571..346896 (+)
NCBI ID WP_063658833.1
RefSeq NZ_SRJG01000005
Uniprot ID UPI0007C458F6
KEGG ID -
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
T6SS_VasE PF05936.14 5.7e-136 19..439
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Outside 1-441 MSLYNPVVWQDGMFMKPQHFQQLDRFQGKQSGMLSGFESPLHWGIKRIEINTELLALGKIGITHAEGILQDRTPFDLPLHASLPEVKDVDASVANKVLYLCCPLPSERSELFGTSKDGARYSIHTQDAVDACYDSEEIANITIGKLNFCLMYEDEDKSAYTSIPILKISEVKPDGSIILDNAYIPTCIDINASTVLKKFTTEFASMLRHRAESIVQRLGVVDQQGVSSVSDFMLLQALNRYEPLFWHFANIEGVHPEAFYRVLLQAEGELATLCSSSRRPQEFVPYNHGNLTSCLSTILHNSKVTLSVMSEQRAIPLPLKEQGYGIRIAPISDRSIVESTTFILAVKADVTLDILHTQFVSQTKIGSIDNIRELINLQLPGINIKPMPVVPRALPYHAGYTYFELDKSSEEWAALNKAAAIAVHIAGDFANLSLQLWAVRL


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.9976 - -


  Protein sequence: 442 a.a.    

>T6CP259574 NZ_SRJG01000005:345571-346896 [Aliivibrio fischeri] [TssK]
MSLYNPVVWQDGMFMKPQHFQQLDRFQGKQSGMLSGFESPLHWGIKRIEINTELLALGKIGITHAEGILQDRTPFDLPLH
ASLPEVKDVDASVANKVLYLCCPLPSERSELFGTSKDGARYSIHTQDAVDACYDSEEIANITIGKLNFCLMYEDEDKSAY
TSIPILKISEVKPDGSIILDNAYIPTCIDINASTVLKKFTTEFASMLRHRAESIVQRLGVVDQQGVSSVSDFMLLQALNR
YEPLFWHFANIEGVHPEAFYRVLLQAEGELATLCSSSRRPQEFVPYNHGNLTSCLSTILHNSKVTLSVMSEQRAIPLPLK
EQGYGIRIAPISDRSIVESTTFILAVKADVTLDILHTQFVSQTKIGSIDNIRELINLQLPGINIKPMPVVPRALPYHAGY
TYFELDKSSEEWAALNKAAAIAVHIAGDFANLSLQLWAVRL*

  Nucleotide sequence: 1326 bp    

>T6CP259574 NZ_SRJG01000005:345571-346896 [Aliivibrio fischeri] [TssK]
ATGTCATTATATAACCCTGTCGTTTGGCAAGATGGAATGTTCATGAAACCGCAACATTTCCAGCAGCTAGATCGCTTTCA
AGGTAAACAAAGTGGAATGCTAAGTGGGTTTGAATCACCTCTTCACTGGGGGATAAAGCGCATTGAAATTAATACCGAGT
TACTGGCTTTAGGAAAAATTGGTATCACACACGCAGAAGGTATCTTGCAAGATAGAACCCCTTTTGATTTGCCACTGCAC
GCTTCTTTACCAGAGGTAAAAGATGTCGATGCATCCGTTGCTAATAAAGTGCTGTACCTATGCTGTCCATTGCCTTCTGA
ACGTTCAGAATTATTTGGTACAAGTAAAGATGGTGCTCGCTATTCTATACACACACAAGATGCAGTAGACGCATGTTATG
ACAGTGAAGAAATTGCCAATATTACCATTGGTAAACTGAATTTTTGTTTAATGTATGAAGATGAAGATAAAAGTGCTTAT
ACTTCTATTCCAATCTTAAAAATTTCAGAAGTAAAACCAGATGGCAGTATTATTCTTGATAATGCTTACATCCCTACATG
TATTGATATCAACGCATCTACGGTATTAAAGAAATTTACTACTGAATTTGCCTCTATGCTGCGTCATCGTGCTGAATCCA
TTGTGCAACGCTTAGGTGTTGTTGATCAGCAAGGTGTTTCATCGGTTTCTGATTTCATGCTACTTCAAGCATTAAACCGT
TATGAACCTTTATTTTGGCACTTTGCCAACATTGAAGGCGTACACCCAGAAGCGTTTTATCGTGTTTTATTGCAAGCAGA
AGGTGAATTAGCAACCCTATGTTCGTCGTCACGCCGACCACAAGAATTCGTTCCTTATAATCACGGTAATTTAACGAGTT
GTTTATCAACCATCTTACATAACTCGAAAGTGACCTTAAGCGTAATGTCAGAACAACGCGCTATTCCTCTTCCTCTTAAA
GAGCAAGGTTATGGTATTCGTATTGCGCCAATTTCAGACAGAAGTATTGTTGAATCGACGACCTTTATCTTGGCAGTTAA
AGCTGACGTTACTCTTGATATACTACATACTCAGTTTGTATCTCAAACTAAGATTGGCTCTATCGATAACATTCGTGAAC
TAATCAATCTACAACTGCCAGGTATCAATATTAAACCTATGCCGGTGGTTCCTCGTGCATTGCCATATCACGCGGGTTAC
ACCTACTTTGAGCTAGACAAATCAAGCGAAGAATGGGCTGCACTAAATAAAGCTGCAGCCATTGCTGTTCATATTGCTGG
TGATTTTGCAAACTTATCTCTACAGCTTTGGGCCGTTAGACTATGA