Detailed information of component protein


Summary

Component ID T6CP259572
Component protein type TssI
T6SS ID (Type) T6SS17505 experimental (Type i3)
Strain Serratia marcescens strain KZ11
Replicon chromosome
Sequence Protein sequence (780 a.a.); Nucleotide sequence (2340 bp)
Reference
experimental Experimental investigation has been performed on this T6SS
External database links

Locus tag (Gene) C3R39_RS14040
Coordinate (Strand) 615577..617916 (-)
NCBI ID WP_048324018.1
RefSeq NZ_PQGJ01000003
Uniprot ID UPI000652170E
KEGG ID -
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
Phage_GPD PF05954.13 1.4e-89 25..328
Phage_base_V PF04717.14 2.1e-13 383..450
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Outside 1-779 MDRLIIAHTPLPAHQLLFRSLSGEEKLAGLFEFDVELLSPDNRLDLKALLGQKITLELRGNPLAPRYLNGNITRMTLSGREAGGNRYYIYRAVLRPTLWYLTQNRDFRIYQEQTVPDILTQVLGQYQVKIDNRLSYDYRIWGYCVQYQESDFDFISRLMEHEGIYYYFTHQREGHTLVLADAPAAHQELAGYASIPYQLAEGGLVENKDSINSWSVSDAITPSLYSLDDYDFRKPRARLLEARQNPASFAQDKAEVFDWPGRYTDHAHGQFYVKVRQQEFEAQHEQMSGEGNSQGIAPGYRFQLTQAPRMEDNRAYLVVSAHYFMQENSYASNDNDVGEQRTEFQVVPADINWRPARTTPWPKTHGPQTAEVVGPEGESIWTDKYGRVKLKFRWDRHGSGNETSSCWVRVSSAWAGWKYGGIQIPRVGEEVVVDFINGDPDRPIITGRVYNEDSMPPWDLPGDATKMGFMSRSKGGGADNASFLFLEDAPGNESFDMHAERNMNMTVENDKNVNIDGSRTTIIGRQQDDTVTGDATFLYKAKRTTTVNGLETANLNAHQTVNIKGGRDLTIIDGGDKIDITGNQSFKLDGAQTQNITQTQHVTVKGNQTLDITEGQQTSTIKQGQTVNITSGGQHTTISAGGQELTIKGGGQTATVTGNVTETYKNDQSTTITGTLTIKAKTINITSSDGVSVQTPSWKDNCHGLKWVATGANFAFYGSNLALTGASLKHTMLDISHNPLSISKTNFKLSNDPMTFTQLGALVTNGALRLSTKALAIFL


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.9870 - -


  Protein sequence: 780 a.a.    

>T6CP259572 NZ_PQGJ01000003:c617916-615577 [Serratia marcescens] [TssI]
MDRLIIAHTPLPAHQLLFRSLSGEEKLAGLFEFDVELLSPDNRLDLKALLGQKITLELRGNPLAPRYLNGNITRMTLSGR
EAGGNRYYIYRAVLRPTLWYLTQNRDFRIYQEQTVPDILTQVLGQYQVKIDNRLSYDYRIWGYCVQYQESDFDFISRLME
HEGIYYYFTHQREGHTLVLADAPAAHQELAGYASIPYQLAEGGLVENKDSINSWSVSDAITPSLYSLDDYDFRKPRARLL
EARQNPASFAQDKAEVFDWPGRYTDHAHGQFYVKVRQQEFEAQHEQMSGEGNSQGIAPGYRFQLTQAPRMEDNRAYLVVS
AHYFMQENSYASNDNDVGEQRTEFQVVPADINWRPARTTPWPKTHGPQTAEVVGPEGESIWTDKYGRVKLKFRWDRHGSG
NETSSCWVRVSSAWAGWKYGGIQIPRVGEEVVVDFINGDPDRPIITGRVYNEDSMPPWDLPGDATKMGFMSRSKGGGADN
ASFLFLEDAPGNESFDMHAERNMNMTVENDKNVNIDGSRTTIIGRQQDDTVTGDATFLYKAKRTTTVNGLETANLNAHQT
VNIKGGRDLTIIDGGDKIDITGNQSFKLDGAQTQNITQTQHVTVKGNQTLDITEGQQTSTIKQGQTVNITSGGQHTTISA
GGQELTIKGGGQTATVTGNVTETYKNDQSTTITGTLTIKAKTINITSSDGVSVQTPSWKDNCHGLKWVATGANFAFYGSN
LALTGASLKHTMLDISHNPLSISKTNFKLSNDPMTFTQLGALVTNGALRLSTKALAIFL*

  Nucleotide sequence: 2340 bp    

>T6CP259572 NZ_PQGJ01000003:c617916-615577 [Serratia marcescens] [TssI]
ATGGATCGTCTTATCATTGCGCACACGCCTTTGCCCGCCCATCAGCTGTTGTTCAGAAGCCTTTCCGGTGAGGAAAAACT
GGCCGGCCTGTTCGAATTCGACGTCGAGCTGCTCAGCCCCGACAATCGGCTCGATCTGAAAGCGCTGCTGGGACAAAAAA
TTACGCTGGAACTGCGGGGCAATCCGTTGGCGCCGCGTTATCTCAACGGCAATATCACGCGCATGACCCTCTCCGGACGA
GAAGCCGGCGGCAACCGTTACTATATCTACCGCGCCGTGCTGCGCCCCACGCTGTGGTATCTGACGCAAAACCGCGATTT
TCGCATCTACCAGGAACAGACCGTTCCCGACATCCTGACTCAGGTGCTGGGGCAGTATCAGGTGAAAATCGATAACCGCC
TGAGTTACGACTACCGCATCTGGGGGTACTGCGTGCAGTACCAGGAGAGCGATTTCGATTTCATCAGTCGTCTGATGGAA
CATGAAGGCATCTATTACTATTTCACGCACCAGCGGGAAGGCCATACGCTGGTGCTGGCCGACGCGCCGGCGGCCCATCA
GGAACTCGCCGGCTACGCCAGCATTCCCTATCAGCTCGCGGAAGGCGGCCTGGTGGAAAACAAAGACAGCATCAACAGCT
GGAGCGTTTCTGACGCCATCACGCCCAGCCTGTATAGCCTGGATGACTACGATTTTCGCAAGCCGCGCGCGCGGTTGCTG
GAGGCCCGGCAAAATCCCGCCTCATTCGCTCAGGATAAAGCCGAGGTGTTCGACTGGCCCGGCCGTTATACCGATCACGC
CCATGGCCAGTTTTACGTCAAGGTTCGCCAACAGGAGTTCGAAGCGCAGCATGAGCAGATGAGCGGCGAAGGCAATTCGC
AGGGCATTGCGCCCGGCTACCGTTTTCAACTGACCCAGGCGCCGCGTATGGAAGACAACCGCGCCTACCTGGTGGTCAGC
GCGCATTACTTCATGCAGGAAAACAGCTACGCCAGCAACGATAACGACGTCGGCGAGCAGCGAACCGAATTTCAGGTCGT
TCCGGCGGACATCAATTGGCGCCCGGCGCGCACCACCCCCTGGCCGAAAACCCATGGCCCGCAAACTGCCGAAGTGGTGG
GCCCGGAAGGCGAAAGCATCTGGACCGATAAATATGGCCGGGTGAAACTCAAGTTCCGTTGGGATCGCCACGGCAGCGGC
AACGAAACCAGCTCCTGCTGGGTGCGCGTCTCCAGCGCCTGGGCCGGCTGGAAATACGGCGGGATCCAGATCCCGCGCGT
CGGTGAGGAAGTGGTGGTCGACTTTATCAACGGAGATCCGGATCGCCCTATCATCACCGGCCGCGTTTACAACGAAGACA
GCATGCCACCGTGGGATCTGCCCGGCGACGCCACCAAAATGGGCTTTATGAGCCGCAGTAAAGGCGGCGGCGCCGACAAT
GCCAGCTTCCTGTTCCTGGAAGATGCGCCCGGCAACGAATCTTTCGACATGCACGCCGAACGCAACATGAACATGACGGT
GGAAAACGACAAGAACGTCAATATTGACGGCAGTCGCACCACCATCATCGGTCGTCAGCAGGACGACACCGTCACCGGCG
ACGCCACGTTCCTGTACAAAGCGAAACGCACCACGACGGTCAATGGGCTGGAAACCGCCAACCTGAACGCTCATCAGACG
GTGAACATCAAAGGCGGCCGCGACCTGACGATTATCGACGGCGGCGATAAAATCGACATCACCGGCAATCAGTCCTTCAA
GCTCGACGGCGCGCAGACGCAAAACATTACGCAAACCCAGCATGTCACGGTCAAAGGCAACCAGACCCTCGACATTACCG
AGGGGCAACAAACCAGCACCATCAAGCAAGGGCAGACGGTCAACATCACCTCCGGCGGGCAGCACACCACCATCTCCGCC
GGCGGGCAGGAATTGACGATTAAAGGCGGCGGCCAAACCGCCACCGTAACCGGGAATGTCACCGAGACCTACAAAAACGA
TCAGAGCACCACGATCACCGGTACCCTGACCATCAAAGCGAAAACGATCAATATCACCAGCAGCGACGGCGTATCGGTGC
AAACACCGAGCTGGAAAGACAACTGCCATGGCTTGAAATGGGTGGCGACCGGGGCCAACTTCGCCTTTTACGGTTCAAAT
CTTGCGTTGACAGGGGCCAGCCTGAAACACACGATGCTCGATATCTCGCACAACCCGCTGTCGATCAGCAAAACCAATTT
CAAGCTCAGTAATGATCCCATGACGTTCACGCAGCTTGGCGCGCTGGTGACCAACGGTGCCTTACGATTGAGCACCAAGG
CGCTGGCGATCTTCTTGTAA