Detailed information of component protein
Summary
| Component ID | T6CP259571 |
| Component protein type | PAAR |
| T6SS ID (Type) | T6SS17505  (Type i3) |
| Strain | Serratia marcescens strain KZ11 |
| Replicon | chromosome |
| Sequence | Protein sequence (131 a.a.); Nucleotide sequence (393 bp) |
| Reference |
Experimental investigation has been performed on this T6SSExternal database links
| Locus tag (Gene) | C3R39_RS14010 |
| Coordinate (Strand) | 609727..610119 (-) |
| NCBI ID | WP_004934933.1 |
| RefSeq | NZ_PQGJ01000003 |
| Uniprot ID | A0A086GD95_9GAMM, A0A5C7DHV4_9GAMM, A0A7X2RFV8_9GAMM, A0A1B3FDI3_9GAMM, A0A086FKF4_SERMA |
| KEGG ID | ssur:ATE40_011590 |
| PDB ID | - |
Pfam domain hit(s)
| Domain | Pfam ID | E-value | Aligned region |
|---|---|---|---|
| DUF4150 | PF13665.8 | 6.7e-39 | 10..114 |
Transmembrane helices
- Transmembrane helices are predicted using TMHMM 2.0 software.
| Prediction | Region | Sequence |
|---|---|---|
| Outside | 1-130 | MFANSQMIGVDLAFPDVCLTPSPAPVPVPYPDIALAPTAIPNAFNILFVGTPAHNMATVTPLTNGDNPGVATGVASGTVMGPSRHLTGAFTVLLKGTPATRLTSLSLQNSTNALGMRIVPSQLKVLLLAP |
Signal peptides
- Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
- Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
- Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
| Prediction | Probability | Cleavage site | Signal peptide sequence |
|---|---|---|---|
| Other | 0.8527 | - | - |
Protein sequence: 131 a.a.
>T6CP259571 NZ_PQGJ01000003:c610119-609727 [Serratia marcescens] [PAAR]
MFANSQMIGVDLAFPDVCLTPSPAPVPVPYPDIALAPTAIPNAFNILFVGTPAHNMATVTPLTNGDNPGVATGVASGTVM
GPSRHLTGAFTVLLKGTPATRLTSLSLQNSTNALGMRIVPSQLKVLLLAP*
MFANSQMIGVDLAFPDVCLTPSPAPVPVPYPDIALAPTAIPNAFNILFVGTPAHNMATVTPLTNGDNPGVATGVASGTVM
GPSRHLTGAFTVLLKGTPATRLTSLSLQNSTNALGMRIVPSQLKVLLLAP*
Nucleotide sequence: 393 bp
>T6CP259571 NZ_PQGJ01000003:c610119-609727 [Serratia marcescens] [PAAR]
ATGTTTGCCAACAGCCAAATGATCGGCGTGGACCTGGCGTTTCCCGACGTCTGTCTGACGCCAAGCCCGGCGCCGGTGCC
CGTGCCTTACCCGGATATCGCCCTGGCGCCGACCGCCATCCCGAATGCGTTCAACATTCTGTTCGTCGGCACCCCGGCGC
ACAACATGGCGACGGTGACGCCGCTGACCAACGGCGACAACCCCGGCGTGGCCACCGGCGTCGCTTCCGGCACGGTGATG
GGGCCGTCCCGCCACCTGACCGGCGCCTTTACCGTGCTGCTCAAAGGCACCCCGGCCACCCGGTTGACCAGCCTCAGCCT
GCAGAATTCGACCAACGCGCTCGGCATGCGCATCGTGCCGAGCCAATTAAAAGTGTTGCTGCTTGCGCCCTGA
ATGTTTGCCAACAGCCAAATGATCGGCGTGGACCTGGCGTTTCCCGACGTCTGTCTGACGCCAAGCCCGGCGCCGGTGCC
CGTGCCTTACCCGGATATCGCCCTGGCGCCGACCGCCATCCCGAATGCGTTCAACATTCTGTTCGTCGGCACCCCGGCGC
ACAACATGGCGACGGTGACGCCGCTGACCAACGGCGACAACCCCGGCGTGGCCACCGGCGTCGCTTCCGGCACGGTGATG
GGGCCGTCCCGCCACCTGACCGGCGCCTTTACCGTGCTGCTCAAAGGCACCCCGGCCACCCGGTTGACCAGCCTCAGCCT
GCAGAATTCGACCAACGCGCTCGGCATGCGCATCGTGCCGAGCCAATTAAAAGTGTTGCTGCTTGCGCCCTGA