Detailed information of component protein


Summary

Component ID T6CP259569
Component protein type TssK
T6SS ID (Type) T6SS17505 experimental (Type i3)
Strain Serratia marcescens strain KZ11
Replicon chromosome
Sequence Protein sequence (449 a.a.); Nucleotide sequence (1347 bp)
Reference
experimental Experimental investigation has been performed on this T6SS
External database links

Locus tag (Gene) C3R39_RS13995
Coordinate (Strand) 607231..608577 (-)
NCBI ID WP_049278152.1
RefSeq NZ_PQGJ01000003
Uniprot ID A0A0P0QJT7_SERMA
KEGG ID -
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
T6SS_VasE PF05936.14 1.6e-149 19..442
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Outside 1-448 MKDAHKVVWTEGMFLRPHHFQQAENYLEGYMRNWGQAHSGCFWGFLTLDLDQTLLRQGKIALNAASGIMPDGTPFRFAGAQQAPAPLSIAENKTGENVVLALPTYRAGREDVIFQESPEALARYLAYENEVDDLNAVSVGSAALQFGRLRLRLMLESELNAEWTALGVTRVLEKRGDNSLRLDTAQIPPMLNCQGNPVLKTFINDLQGLLQQRSQQMSQRLLQPGRGGSSEMVDFMLLQLINRHLGQVSHAYHLDHLHPERLFADWLQFATELASFSAQRTPEGRLPVYDHDNLALCFGKLMLLLRQGLSVVLEDNAIQLTLVERSHGLNVATVQDTKMMRDFGFVLAVRADVAAEVLLTHFPAQMKIAPVTRIRDLVQLQLPGIGLRTMPAAPRQIPYHAGYTYFELEKGGDLWKQMEKSSAFALHLAGEFPGLDMEFWAIRSHTDR


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.9935 - -


  Protein sequence: 449 a.a.    

>T6CP259569 NZ_PQGJ01000003:c608577-607231 [Serratia marcescens] [TssK]
MKDAHKVVWTEGMFLRPHHFQQAENYLEGYMRNWGQAHSGCFWGFLTLDLDQTLLRQGKIALNAASGIMPDGTPFRFAGA
QQAPAPLSIAENKTGENVVLALPTYRAGREDVIFQESPEALARYLAYENEVDDLNAVSVGSAALQFGRLRLRLMLESELN
AEWTALGVTRVLEKRGDNSLRLDTAQIPPMLNCQGNPVLKTFINDLQGLLQQRSQQMSQRLLQPGRGGSSEMVDFMLLQL
INRHLGQVSHAYHLDHLHPERLFADWLQFATELASFSAQRTPEGRLPVYDHDNLALCFGKLMLLLRQGLSVVLEDNAIQL
TLVERSHGLNVATVQDTKMMRDFGFVLAVRADVAAEVLLTHFPAQMKIAPVTRIRDLVQLQLPGIGLRTMPAAPRQIPYH
AGYTYFELEKGGDLWKQMEKSSAFALHLAGEFPGLDMEFWAIRSHTDR*

  Nucleotide sequence: 1347 bp    

>T6CP259569 NZ_PQGJ01000003:c608577-607231 [Serratia marcescens] [TssK]
ATGAAAGATGCTCATAAGGTTGTCTGGACTGAGGGGATGTTTTTACGCCCTCACCATTTCCAGCAGGCGGAAAACTATCT
CGAAGGCTATATGCGCAACTGGGGCCAGGCCCACAGCGGCTGTTTCTGGGGGTTCCTGACCCTGGATCTGGACCAAACGC
TGCTGCGCCAGGGCAAGATTGCGCTCAACGCCGCCAGCGGCATCATGCCGGACGGCACGCCGTTTCGCTTTGCCGGTGCC
CAGCAGGCGCCCGCGCCGCTGAGCATCGCCGAAAACAAGACCGGTGAAAACGTGGTGCTGGCCCTGCCGACTTACCGCGC
AGGGCGTGAAGACGTGATCTTTCAGGAAAGCCCGGAGGCACTGGCGCGCTATCTGGCTTACGAGAACGAAGTCGACGATC
TCAACGCCGTCTCGGTGGGCAGCGCGGCGCTGCAATTCGGTCGCCTGCGCCTGCGGCTGATGCTGGAGAGCGAGCTGAAC
GCCGAATGGACGGCGCTCGGCGTTACCCGCGTGCTGGAAAAGCGCGGCGACAACAGCCTGCGTCTTGATACGGCGCAAAT
CCCGCCGATGCTGAACTGCCAGGGCAACCCGGTACTGAAAACCTTCATCAACGACCTGCAGGGCCTGCTGCAGCAGCGCA
GCCAGCAGATGAGCCAACGCCTGCTGCAGCCGGGCCGCGGCGGCAGTTCCGAAATGGTCGATTTCATGCTGCTGCAGCTG
ATCAACCGTCATCTTGGCCAGGTGAGCCATGCCTATCACCTCGACCATCTGCACCCGGAACGGCTGTTCGCCGATTGGCT
GCAGTTCGCCACCGAGCTCGCCAGCTTCTCGGCGCAGCGCACCCCGGAAGGCCGCCTGCCGGTGTACGACCACGACAACC
TGGCGCTGTGCTTCGGTAAGCTGATGCTGTTGCTGCGTCAGGGCCTGTCGGTGGTGCTGGAAGACAACGCCATTCAGCTG
ACGCTGGTCGAACGATCCCACGGGTTGAACGTCGCTACCGTGCAGGACACCAAAATGATGCGCGACTTCGGTTTCGTCTT
GGCAGTGCGCGCCGACGTGGCCGCCGAGGTGTTGCTGACCCACTTCCCGGCGCAGATGAAGATCGCCCCGGTCACGCGCA
TCCGCGATCTGGTGCAGCTGCAGCTGCCGGGCATCGGCCTGCGCACCATGCCCGCCGCGCCGCGTCAGATCCCCTATCAC
GCCGGCTACACCTATTTCGAGCTGGAAAAAGGCGGCGACCTGTGGAAACAGATGGAAAAATCCAGCGCCTTCGCCCTGCA
TCTGGCCGGTGAGTTCCCGGGGCTGGACATGGAATTTTGGGCGATTCGCAGCCATACGGACCGGTAA